Papers and Talks

Papers

  • E. Bernard, L. Jacob, J. Mairal, E. Viara and J.-P. Vert. A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples.
    BMC Bioinformatics, i16:262, 2015.
    Technical report HAL-01123141, March 2015.
    [open acess link] [link to techreport]

  • E. Bernard, L. Jacob, J. Mairal and J.-P. Vert. Efficient RNA isoform identification and quantification from RNA-seq data with network flows.
    Bioinformatics, 30(17):2447-2455, 2014.
    Technical report HAL-00803134, March 2013.
    [open acess link] [link to techreport]

  • E. Bernard, P. Naveau, M. Vrac and O. Mestre. Clustering of maxima: spatial dependencies among heavy rainfall in france.
    Journal of Climate, 26, 7929-7937, 2013.
    [link][pdf]

  • K.S. Smith and E. Bernard. Geostrophic turbulence near rapid changes in stratification.
    Physics of Fluids, 25, 046601, 2013.
    [link]
  • Conferences-Workshops

  • E. Bernard, L. Jacob, J. Mairal, E.Viara and J.-P. Vert. A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples.
    NIPS workshop on Computational Biology (MLCB), December 2014.
    [The Poster]

  • E. Bernard. Fast isoform detection from RNA-Seq data with network flow techniques.
    ECCB'14 RADIANT Workshop, September 2014.
    [The Slides]

  • E. Bernard, E. Scornet, Y. Jiao, V. Stoven, T. Walter, J.-P. Vert. Kernel bilinear regression for toxicogenetics.
    RECOMB Conference on Regulatory and Systems Genomics, with DREAM Challenges, November 2013.
    [The Video]

  • E. Bernard, L. Jacob, J. Mairal and J.-P. Vert. FlipFlop: Fast Lasso based Isoform Prediction as a FLOw Problem.
    HitSeq, July 2013.
    [The Poster]

  • E. Bernard, L. Jacob, J. Mairal and J.-P. Vert. Efficient sparse method for RNA isoforms identification and quantification from RNA-seq data with network flows.
    NIPS workshop on Computational Biology (MLCB), December 2012.
    [The Video] [The Poster]