Saccharomyces cerevisiae -
Functional Catalogue

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TRANSCRIPTION (787 ORFs)

YIL075c     RPN2     26S proteasome regulatory subunit
YOR259c     RPT4     26S proteasome regulatory subunit
YMR287c     MSU1     3'-5' exonuclease for RNA 3' ss-tail, mitochondrial
YGR195w     SKI6     3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
YHR069c     RRP4     3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
YOL021c     DIS3     3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA
YOR048c     RAT1     5'-3' exoribonuclease
YBL074c     AAR2     A1 cistron splicing factor
YMR164c     MSS11    activator of STA1, STA2, and STA3
YGL127c     SOH1     allows HPR1 null mutant to grow at 37 deg.
YHR193c     EGD2     alpha subunit of the nascent polypeptide-associated complex
YDR252w     BTT1     alternate beta subunit of the nascent polypeptide-associated complex
YDL197c     ASF2     anti-silencing protein
YJL115w     ASF1     anti-silencing protein
YBR120c     CBP6     apo-cytochrome B pre-mRNA processing protein
YJL209w     CBP1     apo-cytochrome b pre-mRNA processing protein
YKL208w     CBT1     apo-cytochrome b pre-mRNA processing protein
YHL038c     CBP2     apo-cytochrome b pre-mRNA processing protein 2
YDR173c     ARG82    arginine metabolism transcription factor
YKL112w     ABF1     ARS-binding factor
YOR113w     AZF1     asparagine-rich zinc finger protein
YLR298c     YHC1     associated with the U1 snRNP complex
YER029c     SMB1     associated with U1 snRNP as part of the Sm-core that is common to all spliceosomal snRNPs
YGR013w     SNU71    associated with U1 snRNP, no counterpart in mammalian U1 snRNP
YFL028c     CAF16    ATP-binding cassette transporter family member
YBL022c     PIM1     ATP-dependent protease, mitochondrial
YBR142w     MAK5     ATP-dependent RNA helicase
YGL171w     ROK1     ATP-dependent RNA helicase
YOR204w     DED1     ATP-dependent RNA helicase
YPL119c     DBP1     ATP-dependent RNA helicase
YNL112w     DBP2     ATP-dependent RNA helicase of DEAD box family
YFL002c     SPB4     ATP-dependent RNA helicase of DEAH box family
YPL029w     SUV3     ATP-dependent RNA helicase, mitochondrial
YDR123c     INO2     basic helix-loop-helix (BHLH) transcription factor
YOL108c     INO4     basic helix-loop-helix transcription factor
YOR344c     TYE7     basic helix-loop-helix transcription factor
YOL067c     RTG1     basic helix-loop-helix transcription factor that regulates CIT2 gene expression
YBL103c     RTG3     bHLH/zip transcription factor that regulates CIT2 gene expression
YLR116w     MSL5     branch point bridging protein
YGR204w     ADE3     C1-tetrahydrofolate synthase (trifunctional enzyme),cytoplasmic
YGL209w     MIG2     C2H2 zinc-finger protein
YLR433c     CNA1     calcineurin B, catalytic subunit
YML057w     CMP2     calcineurin B, catalytic subunit
YKL190w     CNB1     calcineurin B, regulatory subunit
YNL027w     CRZ1     calcineurin responsive zinc-finger
YIL033c     BCY1     cAMP dependent protein kinase, regulatory subunit
YJL164c     TPK1     cAMP-dependent protein kinase 1, catalytic chain
YPL203w     TPK2     cAMP-dependent protein kinase 2, catalytic chain
YKL166c     TPK3     cAMP-dependent protein kinase 3, catalytic chain
YJL033w     HCA4     can suppress the U14 snoRNA rRNA processing function
YKL139w     CTK1     carboxy-terminal domain (CTD) kinase, alpha subunit
YJL006c     CTK2     carboxy-terminal domain (CTD) kinase, beta subunit
YML112w     CTK3     carboxy-terminal domain (CTD) kinase, gamma subunit
YOR061w     CKA2     casein kinase II alpha' chain
YOR039w     CKB2     casein kinase II beta' chain
YGL019w     CKB1     casein kinase II, beta subunit
YIL035c     CKA1     casein kinase II, catalytic alpha chain
YBL021c     HAP3     CCAAT-binding factor subunit
YGL237c     HAP2     CCAAT-binding factor subunit
YKL109w     HAP4     CCAAT-binding factor subunit
YOR358w     HAP5     CCAAT-binding factor subunit
YJR122w     CAF17    CCR4 associated factor
YKR036c     CAF4     CCR4 associated factor
YBR215w     HPC2     cell cycle regulatory protein
YDL220c     CDC13    cell division control protein
YOL123w     HRP1     CF Ib (RNA3' Cleavage factor Ib)
YBR195c     MSI1     chromatin assembly complex, subunit p50
YML102w     CAC2     chromatin assembly complex, subunit p60
YPR018w     RLF2     chromatin assembly complex, subunit p90
YLR115w     CFT2     cleavage and polyadenylation specificity factor, part of CF II
YOR250c     CLP1     cleavage/polyadenylation factor IA subunit
YNL286w     CUS2     cold sensitive U2 snRNA Suppressor
YMR288w     HSH155   component of a multiprotein splicing factor
YGL094c     PAN2     component of PAB1P-stimulated poly(A) ribonuclease
YDR228c     PCF11    component of pre-mRNA 3'-end processing factor CF I
YGL044c     RNA15    component of pre-mRNA 3'-end processing factor CF I
YMR061w     RNA14    component of pre-mRNA 3'-end processing factor CF I
YJR093c     FIP1     component of pre-mRNA polyadenylation factor PF I
YLR277c     YSH1     component of pre-mRNA polyadenylation factor PF I
YPR070w     MED1     component of RNA polymerase II holoenzyme and mediator subcomplex
YPR056w     TFB4     component of RNA polymerase transcription initiation TFIIH factor
YNR023w     SNF12    component of SWI/SNF global transcription activator complex
YOR290c     SNF2     component of SWI/SNF global transcription activator complex
YPL016w     SWI1     component of SWI/SNF global transcription activator complex
YBR289w     SNF5     component of SWI/SNF transcription activator complex
YDR073w     SNF11    component of SWI/SNF transcription activator complex
YCR042c     TSM1     component of TFIID complex
YHR099w     TRA1     component of the Ada-Spt transcriptional regulatory complex
YPR072w     NOT5     component of the NOT protein complex
YKL025c     PAN3     component of the PAB1P-dependent poly(A) ribonuclease
YPL011c     TAF47    component of the TBP-associated protein complex
YHR148w     IMP3     component of the U3 small nucleolar ribonucleoprotein
YJR002w     MPP10    component of the U3 small nucleolar ribonucleoprotein
YNL075w     IMP4     component of the U3 small nucleolar ribonucleoprotein
YEL026w     SNU13    component of the U4/U6.U5 snRNP
YLR192c     HCR1     component of translation initiation factor eIF3, has similarity to human eIF3 p35 subunit
YOR308c     SNU66    component of U4/U6.U5 snRNP
YGL166w     CUP2     copper-dependent transcription factor
YNL232w     CSL4     core component of the 3'-5' exosome
Q0050       AI1      COX1 intron 1 protein
Q0055       AI2      COX1 intron 2 protein
YNL167c     SKO1     cre-binding bzip protein
YOL001w     PHO80    cyclin
YPL042c     SSN3     cyclin-dependent CTD kinase
YPL031c     PHO85    cyclin-dependent protein kinase
YDL108w     KIN28    cyclin-dependent ser/thr protein kinase
YDR334w     SWR1     DEAH-box protein, putative RNA helicase
YNL186w     UBP10    derepression of telomeric silencing
YLR226w     BUR2     divergent CDK-cyclin complex
Q0060       AI3      DNA endonuclease
Q0065       AI4      DNA endonuclease
Q0070       AI5_ALPHA  DNA endonuclease AI5_ALPHA
Q0160       SCEI     DNA endonuclease in 21S rRNA intron
YIL143c     SSL2     DNA helicase
YER171w     RAD3     DNA helicase/ATPase
YER129w     PAK1     DNA polymerase alpha suppressing protein kinase
YDR121w     DPB4     DNA polymerase II (epsilon) 4th subunit
YDR217c     RAD9     DNA repair checkpoint protein
YOL006c     TOP1     DNA topoisomerase I
YNL216w     RAP1     DNA-binding protein with repressor and activator activity
YKL144c     RPC25    DNA-direcred RNA polymerase III, 25 KD subunit
YOR210w     RPB10    DNA-directed polymerase I, II, III 8.3 subunit
YNL248c     RPA49    DNA-directed RNA polymerase A (I) chain, 46 kDa
YJR063w     RPA12    DNA-directed RNA polymerase I, 13.7 KD subunit
YPR010c     RPA135   DNA-directed RNA polymerase I, 135 KD subunit
YOR341w     RPA190   DNA-directed RNA polymerase I, 190 KD alpha subunit
YOR340c     RPA43    DNA-directed RNA polymerase I, 36 KD subunit
YDR156w     RPA14    DNA-directed RNA polymerase I, A14 subunit
YOR224c     RPB8     DNA-directed RNA polymerase I, II, III 16 KD subunit
YPR187w     RPO26    DNA-directed RNA polymerase I, II, III 18 KD subunit
YBR154c     RPB5     DNA-directed RNA polymerase I, II, III 25 KD subunit
YPR110c     RPC40    DNA-directed RNA polymerase I, III 40 KD subunit
YNL113w     RPC19    DNA-directed RNA polymerase I,III 16 KD subunit
YLR418c     CDC73    DNA-directed RNA polymerase II accessory protein
YNL025c     SSN8     DNA-directed RNA polymerase II holoenzyme  and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog
YDR308c     SRB7     DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit
YER022w     SRB4     DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
YGR104c     SRB5     DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
YHR041c     SRB2     DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
YOL051w     GAL11    DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit
YCR081w     SRB8     DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit
YDR443c     SSN2     DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit
YLR071c     RGR1     DNA-directed RNA polymerase II holoenzyme subunit
YBR279w     PAF1     DNA-directed RNA polymerase II regulator
YOL005c     RPB11    DNA-directed RNA polymerase II subunit, 13.6 kD
YBR253w     SRB6     DNA-directed RNA polymerase II suppressor protein
YGL070c     RPB9     DNA-directed RNA polymerase II, 14.2 KD subunit
YOR151c     RPB2     DNA-directed RNA polymerase II, 140 kDa chain
YDR404c     RPB7     DNA-directed RNA polymerase II, 19 KD subunit
YDL140c     RPO21    DNA-directed RNA polymerase II, 215 KD subunit
YJL140w     RPB4     DNA-directed RNA polymerase II, 32 kDa subunit
YOR207c     RET1     DNA-directed RNA polymerase III, 130 KD subunit
YOR116c     RPO31    DNA-directed RNA polymerase III, 160 KD subunit
YNL151c     RPC31    DNA-directed RNA polymerase III, 31 KD subunit
YNR003c     RPC34    DNA-directed RNA polymerase III, 34 KD subunit
YDL150w     RPC53    DNA-directed RNA polymerase III, 47 KD subunit
YPR190c     RPC82    DNA-directed RNA polymerase III, 82 KD subunit
YFL036w     RPO41    DNA-directed RNA polymerase, mitochondrial
YHR143w-a   RPC10    DNA-directed RNA polymerases I, II, III 7.7 KD subunit
YIL021w     RPB3     DNA-directed RNA-polymerase II, 45 kDa
YGL251c     HFM1     DNA/RNA helicase
YGL208w     SIP2     dominant suppressor of some ts mutations in RPO21 and PRP4
YOR047c     STD1     dosage-dependent modulator of glucose repression
YKL020c     SPT23    dosage-dependent suppressor of Ty-induced promotor mutations
YMR239c     RNT1     double-stranded ribonuclease
YDR390c     UBA2     E1-like (ubiquitin-activating) enzyme
YGL058w     RAD6     E2 ubiquitin-conjugating enzyme
YPL046c     ELC1     Elongin C transcription elongation factor
YJL168c     SET2     enhancer of zeste-like
YDR473c     PRP3     essential splicing factor
YOR319w     HSH49    essential yeast splicing factor
YHR154w     ESC4     Establishes Silent Chromatin
YMR219w     ESC1     Establishes Silent Chromatin
YPL169c     MEX67    factor for nuclear mRNA export
YDL014w     NOP1     fibrillarin
YIL131c     FKH1     forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle
YER159c     BUR6     functional homolog of human NC2alpha
YDR397c     NCB2     functional homolog of human NC2beta/Dr1
YPL037c     EGD1     GAL4 DNA-binding enhancer protein
YBR020w     GAL1     galactokinase
YDR009w     GAL3     galactokinase
YGL097w     SRM1     GDP/GTP exchange factor for GSP1P/GSP2P
YGL207w     SPT16    general chromatin factor
YIL038c     NOT3     general negative regulator of transcription, subunit 3
YBR112c     CYC8     general repressor of transcription
YCR084c     TUP1     general transcription repressor
YDR176w     NGG1     general transcriptional adaptor or co-activator
YDR392w     SPT3     general transcriptional adaptor or co-activator
YDR448w     ADA2     general transcriptional adaptor or co-activator
YBR045c     GIP1     GLC7-interacting protein
YNL236w     SIN4     global regulator protein
YHL025w     SNF6     global transcription activator
YER027c     GAL83    glucose repression protein
YBR212w     NGR1     glucose-repressible RNA-binding protein
YNL199c     GCR2     glycolytic genes transcriptional activator
YLR293c     GSP1     GTP-binding protein of the ras superfamily
YOR185c     GSP2     GTP-binding protein of the RAS superfamily
YMR235c     RNA1     GTPase activating protein
YOR076c     SKI7     GTPase with function in 3'-to-5' degradation of mRNA
YGL073w     HSF1     heat shock transcription factor
YJR036c     HUL4     hect domain E3 ubiquitin-protein ligase
YMR290c     HAS1     helicase associated with SET1P
YPR065w     ROX1     heme-dependent transcriptional repressor of hypoxic genes
YDR006c     SOK1     high copy suppressor of a cyclic AMP-dependent protein kinase mutant
YJR147w     HMS2     High-copy MEP2 Suppressor
YMR070w     MOT3     high-copy suppressor of MOT1-SPT3 synthetic lethality
YGR252w     GCN5     histone acetyltransferase
YOR244w     ESA1     histone acetyltransferase
YEL066w     HPA3     histone and other protein acetyltransferase
YPR193c     HPA2     Histone and other Protein Acetyltransferase
YNL021w     HDA1     histone deacetylase A
YNL330c     RPD3     histone deacetylase B
YDR225w     HTA1     histone H2A
YBL003c     HTA2     histone H2A.2
YDR224c     HTB1     histone H2B
YBL002w     HTB2     histone H2B.2
YBR010w     HHT1     histone H3
YNL031c     HHT2     histone H3
YBR009c     HHF1     histone H4
YNL030w     HHF2     histone H4
YBL008w     HIR1     histone transcription regulator
YOR038c     HIR2     histone transcription regulator
YDL106c     PHO2     homeodomain protein
YML027w     YOX1     homoeodomain protein
YNL068c     FKH2     homology to D.melanogaster forkhead protein
YOL055c     THI20    hydroxymethylpyrimidine phosphate (HMP-P) kinase
YDR138w     HPR1     hyperrecombination protein related to TOP1P
YKR019c     IRS4     Increased rDNA silencing
YKL159c     RCN1     inhibitor of calcineurin
YMR283c     RIT1     initiator tRNA phosphoribosyl-transferase
YJL089w     SIP4     interacts with SNF1 protein kinase
YER032w     FIR1     interacts with the poly(A) polymerase in the two hybrid system
YKL032c     IXR1     intrastrand crosslink recognition protein and transcription factor
YLL011w     SOF1     involved in 18S pre-rRNA production
YBR081c     SPT7     involved in alteration of transcription start site selection
YJR140c     HIR3     involved in cell cycle regulation of histone transcription
YKR072c     SIS2     involved in cell cycle-specific gene expression
YHR119w     SET1     involved in chromatin-mediated gene regulation
YPL177c     CUP9     involved in copper homeostasis repression of protein import
YER088c     DOT6     involved in derepression of telomeric silencing
YIL010w     DOT5     involved in derepression of telomeric silencing
YMR302c     PRP12    involved in early maturation of pre-rRNA
YDR021w     FAL1     involved in maturation of 18S rRNA
YIR021w     MRS1     involved in mitochondrial RNA splicing of COB mRNA
YGR158c     MTR3     involved in mRNA transport
YIL030c     SSM4     involved in mRNA turnover
YIL128w     MET18    involved in NER repair and RNA polymerase II transcription
YOR160w     MTR10    involved in nuclear protein import
YJL050w     MTR4     involved in nucleocytoplasmic transport of mRNA
YOR148c     SPP2     involved in pre-mRNA processing
YLR197w     SIK1     involved in pre-rRNA processing
YCL031c     RRP7     involved in pre-rRNA processing and ribosome assembly
YHR006w     STP2     involved in pre-tRNA splicing
YLR375w     STP3     involved in pre-tRNA splicing and in uptake of branched-chain amino acids
YDL048c     STP4     involved in pre-tRNA splicing and in uptake of branched-chain amino acids 
YBR257w     POP4     involved in processing of tRNAs and rRNAs
YDR087c     RRP1     involved in processing rRNA precursor species to mature rRNAs
YNL282w     POP3     involved in processsing of tRNAs and rRNAs
YDR439w     LRS4     involved in rDNA silencing
YNL251c     NRD1     involved in regulation of nuclear pre-mRNA abundance
YIL046w     MET30    involved in regulation of sulfur assimilation genes and cell cycle progression
YPR199c     ARR1     involved in resistance to arsenic compounds
YML049c     RSE1     involved in RNA splicing and ER to Golgi transport
YGR095c     RRP46    involved in rRNA processing
YDL153c     SAS10    involved in silencing
YDR363w     ESC2     involved in silencing
YMR127c     SAS2     involved in silencing at HMR
YGR097w     ASK10    involved in SKN7P-dependent transcription
YPR057w     BRR1     involved in snRNP biogenesis
YGL120c     PRP43    involved in spliceosome disassembly
YIR018w     YAP5     involved in transcription activation
YOL028c     YAP7     involved in transcription activation
YLR039c     RIC1     involved in transcription of ribosomal proteins and ribosomal RNA
YNL097c     PHO23    involved in transcriptional regulation of PHO5
YGL071w     RCS1     iron-regulated transcriptional repressor
YNL037c     IDH1     isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial
YOR136w     IDH2     isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial
YJR060w     CBF1     kinetochore protein
YCL037c     SRO9     La motif-containing proteins that modulate mRNA translation
YMR125w     STO1     large subunit of the nuclear cap-binding protein complex CBC
YDR159w     SAC3     leucine permease transcriptional regulator
YLR382c     NAM2     leucine--tRNA ligase precursor, mitochondrial
YGR100w     MDR1     MAC1P interacting protein
YBR182c     SMP1     MADS-box transcription factor
YNL016w     PUB1     major polyadenylated RNA-binding protein of nucleus and cytoplasm
YBR297w     MAL33    maltose fermentation regulatory protein
YGR288w     MAL13    maltose pathway regulatory protein
YCR039c     MATALPHA2  mating type regulatory protein, expressed copy at MAT locus
YCR040w     MATALPHA1  mating type regulatory protein, expressed copy at MAT locus
YCL066w     HMLALPHA1  mating type regulatory protein, silenced copy at HML
YIR033w     MGA2     may be involved in the remodeling chromatin structure
YGL025c     PGD1     mediator complex subunit
YMR112c     MED11    mediator complex subunit
YHR086w     NAM8     meiotic recombination protein
YNL210w     MER1     meiotic recombination protein
YHL027w     RIM101   meiotic regulatory protein
YOL135c     MED7     member of RNA Polymerase II transcriptional regulation mediator complex
YGR056w     RSC1     member of RSC complex, which remodels the structure of chromatin
YKR008w     RSC4     member of RSC complex, which remodels the structure of chromatin
YLR357w     RSC2     member of RSC complex, which remodels the structure of chromatin
YJR032w     CPR7     member of the cyclophilin family
YLR216c     CPR6     member of the cyclophilin family
YHR211w     FLO5     member of the FLO1P family of flocculation proteins
YDR191w     HST4     member of the SIR2P family of putative NAD-dependent histone deacetylases
YOL148c     SPT20    member of the TBP class of SPT proteins that alter transcription site selection
YMR021c     MAC1     metal binding activator
YJL056c     ZAP1     metalloregulatory protein involved in zinc-responsive transcriptional regulation
YLR131c     ACE2     metallothionein expression activator
YBL013w     FMT1     Methionyl-tRNA Transformylase
YMR023c     MSS1     mitochondrial GTPase involved in expression of COX1
YJR045c     SSC1     mitochondrial heat shock protein 70-related protein
YDL044c     MTF2     mitochondrial protein involved in mRNA splicing and protein synthesis
YBR026c     (MRF1)   mitochondrial respiratory function protein
YBR236c     ABD1     mRNA cap methyltransferase
YOL149w     DCP1     mRNA decapping enzyme
YGL130w     CEG1     mRNA guanylyltransferase (mRNA capping enzyme, alpha subunit)
Q0110       BI2      mRNA maturase BI2
Q0115       BI3      mRNA maturase BI3
Q0120       BI4      mRNA maturase BI4
YER165w     PAB1     mRNA polyadenylate-binding protein
YKL186c     MTR2     mRNA transport protein
YKL009w     MRT4     mRNA turnover 4
YCR073w-a   SOL2     multicopy suppressor of LOS1-1
YNR034w     SOL1     multicopy suppressor of LOS1-1
YER161c     SPT2     multifunctional HMG-like chromatin protein
YGL173c     KEM1     multifunctional nuclease
YOR298c-a   MBF1     multiprotein bridging factor mediates GCN4-dependent transcriptional activation
YDR120c     TRM1     N2,N2-dimethylguanine tRNA methyltransferase
YML051w     GAL80    negative regulator for expression of galactose-induced genes
YKL185w     ASH1     negative regulator of HO transcription
YPL139c     UME1     negative regulator of meiosis
YHL020c     OPI1     negative regulator of phospholipid biosynthesis pathway
YDR464w     SPP41    negative regulator of PRP3 and PRP4 gene expression
YGL151w     NUT1     negative transcription regulator from artifical reporters
YPR168w     NUT2     negative transcription regulator from artifical reporters
YDR207c     UME6     negative transcriptional regulator
YER127w     LCP5     NGG1P interacting protein
YGL221c     NIF3     NGG1P-interacting factor 3
YLL036c     PRP19    non-snRNP sliceosome component required for DNA repair
YJL148w     RPA34    nonessential component of RNA-polI
YHR170w     NMD3     nonsense-mediated mRNA decay protein
YMR064w     AEP1     nuclear control of ATPase messenger RNA expression protein
YGR218w     CRM1     nuclear export factor, exportin
YGR159c     NSR1     nuclear localization sequence binding protein
YGL122c     NAB2     nuclear poly(A)-binding protein
YDR192c     NUP42    nuclear pore protein
YGL092w     NUP145   nuclear pore protein
YGL172w     NUP49    nuclear pore protein
YJL041w     NSP1     nuclear pore protein
YJL061w     NUP82    nuclear pore protein
YJR042w     NUP85    nuclear pore protein
YKL057c     NUP120   nuclear pore protein
YKL068w     NUP100   nuclear pore protein
YKR082w     NUP133   nuclear pore protein
YMR047c     NUP116   nuclear pore protein
YCR093w     CDC39    nuclear protein
YGL115w     SNF4     nuclear regulatory protein
YBR167c     POP7     nuclear RNase P subunit
YCR018c     SRD1     nucleolar protein
YDR432w     NPL3     nucleolar protein
YNL061w     NOP2     nucleolar protein
YPL043w     NOP4     nucleolar protein
YDL208w     NHP2     nucleolar rRNA processing protein
YHR072w-a   NOP10    nucleolar rRNA processing protein
YHR089c     GAR1     nucleolar rRNA processing protein
YML065w     ORC1     origin recognition complex, 104 KD subunit
YHR118c     ORC6     origin recognition complex, 50 KD subunit
YNL261w     ORC5     origin recognition complex, 50 kDa subunit
YPR162c     ORC4     origin recognition complex, 56 KD subunit
YLL004w     ORC3     origin recognition complex, 62 kDa subunit
YBR060c     ORC2     origin recognition complex, 72 kDa subunit
YBR233w     PBP2     PAB1 binding protein
YAL051w     OAF1     peroxisome proliferating transcription factor
YOR363c     PIP2     peroxisome proliferating transcription factor
YBL005w     PDR3     pleiotropic drug resistance regulatory protein
YNL076w     MKS1     pleiotropic regulatory factor
YKR025w     RPC37    Pol III transcription
YKR002w     PAP1     poly(A) polymerase
YPL190c     NAB3     polyadenylated RNA-binding protein
YNL317w     PFS2     polyadenylation factor I subunit 2 required for mRNA 3'-end processing, bridges two mRNA 3'-end processing factors
YJL025w     RRN7     polymerase I specific transcription initiation factor
YKL015w     PUT3     positive activator of the proline utilisation pathway
YLR430w     SEN1     positive effector of tRNA-splicing endonuclease
YDL080c     THI3     positive regulation factor of thiamin metabolism
YGL192w     IME4     positive transcription factor for IME2
YDR421w     ARO80    positive transcription regulator of ARO9 and ARO10
YHR163w     SOL3     possible 6-phosphogluconolactonase
YDR017c     KCS1     potential transcription factor of the BZIP type
YDR301w     CFT1     pre-mRNA 3'-end processing factor CF II
YBR237w     PRP5     pre-mRNA processing RNA-helicase
YAL032c     PRP45    pre-mRNA splicing factor
YDL043c     PRP11    pre-mRNA splicing factor
YER013w     PRP22    pre-mRNA splicing factor
YGR075c     PRP38    pre-mRNA splicing factor
YJL203w     PRP21    pre-mRNA splicing factor
YJR050w     ISY1     pre-mRNA splicing factor
YKL074c     MUD2     pre-mRNA splicing factor
YML046w     PRP39    pre-mRNA splicing factor
YMR268c     PRP24    pre-mRNA splicing factor
YDL030w     PRP9     pre-mRNA splicing factor (snRNA-associated protein)
YDR088c     SLU7     pre-mRNA splicing factor affecting 3' splice site choice
YDR243c     PRP28    pre-mRNA splicing factor RNA helicase of DEAD box family
YGR091w     PRP31    pre-mRNA splicing protein
YLR223c     IFH1     pre-rRNA processing machinery control protein
YAL043c     PTA1     pre-tRNA processing protein / PF I subunit
YKL205w     LOS1     pre-tRNA splicing protein
YDR463w     STP1     pre-tRNA splicing protein, transcription factor
YDL084w     SUB2     probably involved in pre-mRNA splicing
YMR229c     RRP5     processing of pre-ribosomal RNA
YJR017c     ESS1     processing/termination factor 1
YPR137w     RRP9     protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing
YNL221c     POP1     protein component of ribonuclease P and ribonuclease MRP
YDR083w     RRP8     protein involved in cleavage at site A2 in pre-rRNA in the pathway of ribosomal RNA processing
YFL033c     RIM15    protein kinase involved in expression of meiotic genes
YPR107c     YTH1     protein of the 3' processing complex
YGL105w     ARC1     protein with specific affinity for G4 quadruplex nucleic acids
YFL001w     DEG1     pseudouridine synthase
YNL292w     PUS4     pseudouridine synthase
YPL212c     PUS1     pseudouridine synthase 1
YGL063w     PUS2     pseudouridine synthase 2
YLR059c     REX2     putative 3'-5' exonuclease
YDR395w     SXM1     putative beta-karyopherin
YGL194c     HOS2     putative histone deacetylase
YDL098c     SNU23    Putative RNA binding zinc finger protein
YDL031w     DBP10    putative RNA helicase involved in ribosome biogenesis
YDL160c     DHH1     putative RNA helicase of the DEAD box family
YGL078c     DBP3     putative RNA helicase required for pre-rRNA processing
YLR175w     CBF5     putative rRNA pseuduridine synthase
YBL066c     SEF1     putative transcription factor
YDR002w     YRB1     ran-specific GTPase-activating protein
YBR275c     RIF1     RAP1-interacting factor 1
YGL244w     RTF1     regulates DNA binding properties of TBP
YCL017c     NFS1     regulates Iron-Sulfur cluster proteins, cellular Iron uptake, andIron distribution
YFR029w     PTR3     regulator of expression of the PTR2, GAP1 and BAP2 genes
YKL038w     RGT1     regulator of glucose-induced genes
YOR294w     RRS1     regulator of ribosome synthesis
YBR240c     THI2     regulator of the thiamine biosynthetic genes
YDR257c     RMS1     regulatory protein
YNL139c     RLR1     regulatory protein
YMR016c     SOK2     regulatory protein in the PKA signal transduction pathway
YDR213w     UPC2     regulatory protein involved in control of sterol uptake
YCL055w     KAR4     regulatory protein required for pheromone induction of karyogamy genes
YDR028c     REG1     regulatory subunit for protein phosphatase GLC7P
YLR176c     RFX1     repressor of DNA damage-inducible genes
YIL106w     MOB1     required for completion of mitosis and maintenance of ploidy
YER109c     FLO8     required for diploid filamentous growth
YPL211w     NIP7     required for efficient 60S ribosome subunit biogenesis
YNR052c     POP2     required for glucose derepression
YER120w     SCS2     required for inositol metabolism
YHR065c     RRP3     required for maturation of the 35S primary transcript
YMR179w     SPT21    required for normal transcription at a number of loci
YER107c     GLE2     required for nuclear pore complex structure and function
YKL093w     MBR1     required for optimal growth on glycerol
YOR310c     NOP58    required for pre-18S rRNA processing
YKL172w     EBP2     required for pre-rRNA processing and ribosomal subunit assembly
YHR062c     RPP1     required for processing of tRNA and 35S rRNA
YAL033w     POP5     required for processing of tRNAs and rRNAs
YBL018c     POP8     required for processing of tRNAs and rRNAs
YGR030c     POP6     required for processing of tRNAs and rRNAs
YJL076w     NET1     required for rDNA silencing and nucleolar integrity
YCL054w     SPB1     required for ribosome synthesis, putative methylase
YLR067c     PET309   required for stability and translation of COX1 mRNA
YIR011c     STS1     required for transport of RNA15P from the cytoplasm to the nucleus
YML091c     RPM2     ribonuclease P precursor, mitochondrial
YDR195w     REF2     RNA 3'-end formation protein
YPL228w     CET1     RNA 5'-triphosphatase (mRNA capping enzyme, beta subunit)
YMR180c     CTL1     RNA 5'-triphosphatase with manganese- or cobalt-dependent NTPase activities
YDR381w     YRA1     RNA annealing protein
YDL051w     LHP1     RNA binding protein
YDR478w     SNM1     RNA binding protein of RNase MRP
YLR107w     REX3     RNA exonuclease, member of the family of 3' -5' exonucleases
YDL207w     GLE1     RNA export mediator
YLL008w     DRS1     RNA helicase of the DEAD box family
YDR194c     MSS116   RNA helicase of the DEAD box family, mitochondrial
YKR024c     DBP7     RNA helicase required for 60S ribosomal subunit assembly
YNR038w     DBP6     RNA helicase required for 60S ribosomal subunit assembly
YKL078w     DHR2     RNA helicase, involved in ribosomal RNA maturation
YER172c     BRR2     RNA helicase-related protein
YKL125w     RRN3     RNA polymerase I specific transcription factor
YBL014c     RRN6     RNA polymerase I specific transcription initiation factor
YLR141w     RRN5     RNA polymerase I specific transcription initiation factor
YML043c     RRN11    RNA polymerase I specific transcription initiation factor
YMR270c     RRN9     RNA polymerase I specific transcription initiation factor
YBL025w     RRN10    RNA polymerase I-specific transcription initiation factor
YHR058c     MED6     RNA polymerase II transcriptional regulation mediator
YDR045c     RPC11    RNA polymerase III subunit C11, required for RNA cleavage activity and transcription termination
YPL007c     TFC8     RNA Polymerase III transcription initiation factor TFIIIC (tau), 60 kDa subunit
YMR228w     MTF1     RNA polymerase specific factor, mitochondrial
YJL133w     MRS3     RNA splicing protein and member of the mitochondrial carrier family (MCF)
YKR052c     MRS4     RNA splicing protein and member of the mitochondrial carrier family (MCF)
YOR334w     MRS2     RNA splicing protein and member of the mitochondrial carrier family (MCF)
YKR086w     PRP16    RNA-dependent ATPase
YNR011c     PRP2     RNA-dependent ATPase of DEAH box family
YIR015w     RPR2     RNase P subunit
YPL266w     DIM1     rRNA (adenine-N6,N6-)-dimethyltransferase
YOR201c     PET56    rRNA (guanosine-2'-O-)-methyltransferase
YCR035c     RRP43    rRNA processing protein
YDL111c     RRP42    rRNA processing protein
YDR280w     RRP45    rRNA processing protein
YDR190c     RVB1     RUVB-like protein
YPL235w     RVB2     RUVB-like protein
YMR139w     RIM11    ser/thr protein kinase
YGR092w     DBF2     ser/thr protein kinase related to DBF20P
YAL016w     TPD3     ser/thr protein phosphatase 2A, regulatory chain A
YBL052c     SAS3     silencing protein
YOL068c     HST1     silencing protein
YOR025w     HST3     silencing protein
YDR227w     SIR4     silencing regulatory and DNA-repair protein
YLR442c     SIR3     silencing regulatory and DNA-repair protein
YKR101w     SIR1     silencing regulatory protein
YDL042c     SIR2     silencing regulatory protein and DNA-repair protein
YKL070w              similarity to B.subtilis transcriptional regulatory protein
YDL070w     BDF2     similarity to bromodomain protein BDF1P
YOR179c              similarity to BRR5 protein
YOL042w     NGL1     similarity to CCR4 protein
YIR001c     SGN1     similarity to D.melanogaster RNA binding protein
YGL014w              similarity to Drosophila pumilio protein and MPT5P protein
YBR061c              similarity to E.coli ftsJ protein
YGR249w     MGA1     similarity to heat shock transcription factors
YPL015c     HST2     similarity to HST1P and SIR2P
YNL107w     YAF9     similarity to human AF-9 protein
YPR068c     HOS1     similarity to human histone deacetylase HD1
YAR044w     OSH1     similarity to human oxysterol binding protein (OSBP)
YAR003w     FUN16    similarity to human RB protein binding protein
YER169w     RPH1     similarity to human retinoblastoma binding protein 2
YJR119c              similarity to human retinoblastoma binding protein 2
YOL010w     RCL1     similarity to human RNA 3'-terminal phosphate cyclase
YPR031w              similarity to human zinc-finger protein BR140
YOL133w     HRT1     similarity to Lotus RING-finger protein
YCL033c              similarity to M.capricolum transcription repressor
YER028c              similarity to MIG1P
YER130c              similarity to MSN2P and weak similarity to MSN4P
YER184c              similarity to multidrug resistance proteins PDR3P and PDR1P
YHR015w     MIP6     similarity to PES4 a PAB-like protein
Q0255                similarity to Podospora cytb intron 1a and coII intron protein 2
YPR115w              similarity to probable transcription factor ASK10P, and to YNL047c and YIL105c
YIL130w              similarity to PUT3P and to hypothetical protein YJL206c
YCR020c     PET18    similarity to regulatory protein
YPL230w     USV1     similarity to RGM1P, weak similarity to transcription factors
YIR005w     IST3     similarity to RNA-binding proteins
YCR087c-a            similarity to S. pombe SPBC215.06c putative nucleic acid-binding protein
YNL175c     NOP13    similarity to S.pombe Rnp24p, NSR1P and human splicing factor
YGL150c     INO80    similarity to SNF2P and human SNF2alpha
YCR106w              similarity to transcription factor
YPR008w     HAA1     similarity to transcription factor
YLL054c              similarity to transcription factor PIP2P
YPR013c              similarity to transcription factors
YPR015c              similarity to transcription factors
YDR303c     RSC3     similarity to transcriptional regulator proteins
YJL103c              similarity to YBR239c
YJL206c              similarity to YIL130p and PUT3P
YHR178w     STB5     SIN3 binding protein
YKL072w     STB6     SIN3 binding protein
YDR169c     STB3     SIN3 protein-binding protein
YMR053c     STB2     SIN3P binding protein
YNL309w     STB1     SIN3P binding protein
YHL034c     SBP1     single-strand nucleic acid binding protein
YBR103w     SIF2     SIR4P interacting protein
YBL026w     LSM2     Sm-like (Lsm) protein
YDR378c     LSM6     Sm-like (Lsm) protein
YER112w     LSM4     Sm-like (Lsm) protein
YER146w     LSM5     Sm-like (Lsm) protein
YJL124c     LSM1     Sm-like (Lsm) protein
YLR438c-a   LSM3     Sm-like (Lsm) protein
YNL147w     LSM7     Sm-like (Lsm) protein
YPL178w     CBC2     small subunit of the nuclear cap-binding protein complex CBC
YGR074w     SMD1     snRNA-associated protein
YPR182w     SMX3     snRNA-associated protein of the SM family
YFR005c     SAD1     SnRNP assembly defective
YFL017w-a   SMX2     snRNP G protein (the homologue of the human Sm-G)
YBR055c     PRP6     snRNP(U4/U6)-associated splicing factor
YOR159c     SME1     spliceosomal snRNA-associated Sm core protein required for mRNA splicing, also likely associated with telomerase TLC1 RNA
YLR147c     SMD3     spliceosomal snRNA-associated Sm core protein required for pre-mRNA splicing
YBR188c     NTC20    splicing factor
YJR022w     LSM8     splicing factor
YKL012w     PRP40    splicing factor
YPR101w     SNT309   splicing factor
YPR134w     MSS18    splicing protein
YGR222w     PET54    splicing protein and translational activator, mitochondrial
YLR399c     BDF1     sporulation protein
YNL204c     SPS18    sporulation-specific zinc-finger protein
YMR037c     MSN2     stress responsive regulatory protein
YIL101c     XBP1     stress-induced transcriptional repressor
YBR245c     ISW1     strong similarity to D.melanogaster iswi protein
YDR026c              strong similarity to DNA-binding protein REB1P
YOR304w     ISW2     strong similarity to Drosophila ISW1 and human SNF2P homolog
YLR117c     CLF1     strong similarity to Drosophila putative cell cycle control protein crn
YHR169w     DBP8     strong similarity to DRS1P and other probable ATP-dependent RNA helicases
YNL004w     HRB1     strong similarity to GBP2P
YBR238c              strong similarity to general chromatin factor SPT16P
YGL236c     MTO1     strong similarity to gidA E.coli protein
YFL052w              strong similarity to Mal63p, YPR196w and MAL13P
YPL060w     LPE10    strong similarity to MRS2P
YNL255c     GIS2     strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein
YPR196w              strong similarity to regulatory protein Mal63p
YCR004c     YCP4     strong similarity to S. pombe protein obr1
YGR248w     SOL4     strong similarity to SOL3P
YLR228c     ECM22    strong similarity to YDR213w, weak similarity to LYS14P
YHR056c     RSC30    strong similarity to YHR054c
YDR451c     YHP1     strong similarity to YOX1P
YML081w              strong similarity to ZMS1 protein
YPL086c     ELP3     subunit of elongator/RNAPII holoenzyme with histone acetylase activity
YER116c     SLX8     subunit of HEX3P-SLX8P complex, required for cell growth in the absence of SGS1 or TOP3
YGL133w     ITC1     subunit of ISW2 chromatin remodelling complex
YNR010w     CSE2     subunit of RNA polymerase II mediator complex
YMR263w     SAP30    subunit of the histone deacetylase B complex
YEL056w     HAT2     subunit of the major yeast histone acetyltransferase
YCR052w     RSC6     subunit of the RSC complex
YFR037c     RSC8     subunit of the RSC complex
YIL126w     STH1     subunit of the RSC complex
YLR321c     SFH1     subunit of the RSC complex
YOR213c     SAS5     subunit of the RSC complex
YLR316c     TAD3     subunit of tRNA-specific adenosine-34 deaminase
YGL254w     FZF1     sulfite resistance protein
YLR139c     SLS1     suppresses lethality of SSM4 deletion
YNL222w     SSU72    suppressor of cs mutant of SUA7
YML017w     PSP2     suppressor of DNA polymerase alpha mutation
YPR125w     MRS7     suppressor of MRS2-1 mutation
YKR092c     SRP40    suppressor of mutant AC40 of RNA polymerase I and III
YBR152w     SPP381   Suppressor of Pre-mRNA Processing mutant
YLR119w     SRN2     suppressor of RNA1-1 mutation
YDR310c     SUM1     suppressor of SIR mutations
YDR416w     SYF1     synthetic lethal with CDC40
YGR129w     SYF2     synthetic lethal with CDC40
YML114c     TAF65    TBP Associated Factor 65 KDa
YKL058w     TOA2     TFIIA subunit (transcription initiation factor), 13.5 kD
YOR194c     TOA1     TFIIA subunit (transcription initiation factor), 32 kD
YPR086w     SUA7     TFIIB subunit (transcription initiation factor), factor E
YBR198c     TAF90    TFIID and SAGA subunit
YDR145w     TAF61    TFIID and SAGA subunit
YDR167w     TAF25    TFIID and SAGA subunit
YGL112c     TAF60    TFIID and SAGA subunit
YMR236w     TAF17    TFIID and SAGA subunit
YGR274c     TAF145   TFIID subunit (TBP-associated factor), 145 kD
YML098w     TAF19    TFIID subunit (TBP-associated factor), 19 kD
YML015c     TAF40    TFIID subunit (TBP-associated factor), 40KD
YMR227c     TAF67    TFIID subunit (TBP-associated factor), 67 kD
YKR062w     TFA2     TFIIE subunit (transcription initiation factor), 43 KD
YKL028w     TFA1     TFIIE subunit (transcription initiation factor), 66 kD
YMR277w     FCP1     TFIIF interacting component of CTD phosphatase
YGR186w     TFG1     TFIIF subunit (transcription initiation factor), 105 kD
YPL129w     ANC1     TFIIF subunit (transcription initiation factor), 30 kD
YGR005c     TFG2     TFIIF subunit (transcription initiation factor), 54 kD
YDR311w     TFB1     TFIIH subunit (transcription initiation factor), 75 kD
YPR025c     CCL1     TFIIH subunit (transcription initiation factor), cyclin C component
YLR005w     SSL1     TFIIH subunit (transcription initiation factor), factor B
YDR460w     TFB3     TFIIH subunit (transcription/repair factor)
YPL122c     TFB2     TFIIH subunit (transcription/repair factor)
YPR186c     PZF1     TFIIIA (transcription initiation factor)
YGR246c     BRF1     TFIIIB subunit, 70 kD
YNL039w     TFC5     TFIIIB subunit, 90 kD
YGR047c     TFC4     TFIIIC (transcription initiation factor) subunit, 131 kD
YAL001c     TFC3     TFIIIC (transcription initiation factor) subunit, 138 kD
YOR110w     TFC7     TFIIIC (transcription initiation factor) subunit, 55 kDa
YDR362c     TFC6     TFIIIC (transcription initiation factor) subunit, 91 kD
YBR123c     TFC1     TFIIIC (transcription initiation factor) subunit, 95 kD
YGL043w     DST1     TFIIS (transcription elongation factor)
YER148w     SPT15    the TATA-binding protein TBP
YCR077c     PAT1     topoisomerase II-associated protein
YGR063c     SPT4     transcription elongation protein
YGR116w     SPT6     transcription elongation protein
YML010w     SPT5     transcription elongation protein
YBL093c     ROX3     transcription factor
YBR049c     REB1     transcription factor
YCR065w     HCM1     transcription factor
YDL165w     CDC36    transcription factor
YDR146c     SWI5     transcription factor
YER111c     SWI4     transcription factor
YFL031w     HAC1     transcription factor
YFR034c     PHO4     transcription factor
YGL013c     PDR1     transcription factor
YKL043w     PHD1     transcription factor
YKR099w     BAS1     transcription factor
YLR098c     CHA4     transcription factor
YLR182w     SWI6     transcription factor
YLR256w     HAP1     transcription factor
YLR451w     LEU3     transcription factor
YOR140w     SFL1     transcription factor
YOR162c     YRR1     transcription factor
YPL248c     GAL4     transcription factor
YFL021w     GAT1     transcription factor for nitrogen regulation
YER040w     GLN3     transcription factor for positive nitrogen regulation
YML099c     ARG81    transcription factor involved in arginine metabolism
YMR042w     ARG80    transcription factor involved in arginine metabolism
YMR280c     CAT8     transcription factor involved in gluconeogenesis
YGL181w     GTS1     transcription factor of the GCS1P/GLO3P/SPS18P family
YMR043w     MCM1     transcription factor of the MADS box family
YPL089c     RLM1     transcription factor of the MADS box family
YLR014c     PPR1     transcription factor regulating pyrimidine pathway
YJR094c     IME1     transcription factor required for sporulation
YHR206w     SKN7     transcription factor with similarity to HSF1P
YJR127c     ZMS1     transcription factor with similarity to regulatory protein ARD1P
YDR259c     YAP6     transcription factor, of a fungal-specific family of bzip proteins
YHL009c     YAP3     transcription factor, of a fungal-specific family of bzip proteins
YDL056w     MBP1     transcription factor, subunit of the MBF factor
YOR174w     MED4     transcription regulation mediator
YJL127c     SPT10    transcription regulatory protein
YJL176c     SWI3     transcription regulatory protein
YOL004w     SIN3     transcription regulatory protein
YPL082c     MOT1     transcriptional accessory protein
YDR423c     CAD1     transcriptional activator
YHR084w     STE12    transcriptional activator
YKL062w     MSN4     transcriptional activator
YOL116w     MSN1     transcriptional activator
YOR028c     CIN5     transcriptional activator
YPL075w     GCR1     transcriptional activator
YIR023w     DAL81    transcriptional activator for allantoin and GABA catabolic genes
YNL314w     DAL82    transcriptional activator for allantoin catabolic genes
YDL170w     UGA3     transcriptional activator for GABA catabolic genes
YML007w     YAP1     transcriptional activator involved in oxidative stress response
YEL009c     GCN4     transcriptional activator of amino acid biosynthetic genes
YOL089c     HAL9     transcriptional activator of ENA1
YDR034c     LYS14    transcriptional activator of lysine pathway genes
YIL129c     TAO3     Transcriptional Activator of OCH1
YIR017c     MET28    transcriptional activator of sulfur amino acid metabolism
YNL103w     MET4     transcriptional activator of sulfur metabolism
YPR104c     FHL1     transcriptional activator of the forkhead/hnf3 family
YLR055c     SPT8     transcriptional adaptor or co-activator
YMR039c     SUB1     transcriptional coactivator
YPL254w     HFI1     transcriptional coactivator
YOR229w     WTM2     transcriptional modulator
YOR230w     WTM1     transcriptional modulator
YBR193c     MED8     transcriptional regulation mediator
YDL005c     MED2     transcriptional regulation mediator
YAL021c     CCR4     transcriptional regulator
YER164w     CHD1     transcriptional regulator
YIL084c     SDS3     transcriptional regulator
YNL012w     SPO1     transcriptional regulator involved in sporulation
YDR160w     SSY1     transcriptional regulator of several transporter genes
YDR253c     MET32    transcriptional regulator of sulfur amino acid metabolism
YPL038w     MET31    transcriptional regulator of sulfur amino acid metabolism
YER068w     MOT2     transcriptional repressor
YGL035c     MIG1     transcriptional repressor
YJL110c     GZF3     transcriptional repressor
YKR034w     DAL80    transcriptional repressor for allantoin and GABA catabolic genes
YDR043c     NRG1     transcriptional repressor for glucose repression of STA1 gene expression
YMR182c     RGM1     transcriptional repressor protein
YNL062c     GCD10    translation initiation factor eIF3 RNA-binding subunit
YBL024w     NCL1     tRNA (cytosine-5-)-methyltransferase
YDL112w     TRM3     tRNA (guanosine-2'-O-)-methyltransferase
YOL102c     TPT1     tRNA 2'-phosphotransferase
YOR274w     MOD5     tRNA isopentenyltransferase
YJL087c     TRL1     tRNA ligase
YER168c     CCA1     tRNA nucleotidyltransferase
YPL083c     SEN54    tRNA splicing endonuclease alpha subunit
YLR105c     SEN2     tRNA splicing endonuclease beta subunit
YMR059w     SEN15    tRNA splicing endonuclease delta subunit
YAR008w     SEN34    tRNA splicing endonuclease gamma subunit
YGL243w     TAD1     tRNA-specific adenosine deaminase 1
YJL035c     TAD2     tRNA-specific adenosine deaminase 2
YLR136c     TIS11    tRNA-specific adenosine deaminase 3
YBR083w     TEC1     Ty transcription activator
YOR337w     TEA1     TY1 enhancer activator
YIL061c     SNP1     U1 small nuclear ribonucleoprotein
YDR240c     SNU56    U1 snRNA protein, no counterpart in mammalian snRNP
YDR235w     PRP42    U1 snRNP associated protein, required for pre-mRNA splicing
YLR275w     SMD2     U1 snRNP protein of the Sm class
YBR119w     MUD1     U1 snRNP-specific A protein
YPL213w     LEA1     U2 A' snRNP protein
YIR009w     MSL1     U2 snRNA-associated protein with similarity to U2B
YMR240c     CUS1     U2 snRNP protein
YPR178w     PRP4     U4/U6 snRNP 52 KD protein
YGR006w     PRP18    U5 snRNA-associated protein
YHR165c     PRP8     U5 snRNP protein, pre-mRNA splicing factor
YGL141w     HUL5     ubiquitin-protein ligase (E3)
YER151c     UBP3     ubiquitin-specific proteinase
YNR063w              weak similarity to CYC1/CYP3 transcription activator
YLR013w     GAT3     weak similarity to nitrogen regulatory proteins
YIL105c              weak similarity to probable transcription factor ASK10P
YGR200c     ELP2     weak similarity to rape guanine nucleotide regulatory protein
YLR278c              weak similarity to regulatory proteins
YML076c              weak similarity to transcription factor
YBR239c              weak similarity to transcription factor PUT3P
YBR033w              weak similarity to transcription factors
YBR150c     TBS1     weak similarity to transcription factors
YGR067c              weak similarity to transcription factors
YKR064w              weak similarity to transcription factors
YLR266c              weak similarity to transcription factors
YPL133c              weak similarity to transcription factors
YKL222c              weak similarity to transcription factors, similarity to finger proteins YOR162c, YOR172w and YLR266c
YBL054w              weak similarity to transforming protein (B-myb)
YMR019w     STB4     weak similarity to YIL130w, PUT3P and other transcription factors
YKL005c              weak similarity to YKR029c and D.melanogaster transcription elongation factor DmS-II
YDL087c     LUC7     yeast U1 snRNP protein with a role in 5' splice site recognition
YER122c     GLO3     zinc finger protein
YDR216w     ADR1     zinc-finger transcription factor
YGR044c     RME1     zinc-finger transcription factor

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