mRNA transcription (575 ORFs)YOR259c RPT4 26S proteasome regulatory subunit YMR287c MSU1 3'-5' exonuclease for RNA 3' ss-tail, mitochondrial YBL074c AAR2 A1 cistron splicing factor YHR193c EGD2 alpha subunit of the nascent polypeptide-associated complex YDR252w BTT1 alternate beta subunit of the nascent polypeptide-associated complex YDL197c ASF2 anti-silencing protein YJL115w ASF1 anti-silencing protein YBR120c CBP6 apo-cytochrome B pre-mRNA processing protein YJL209w CBP1 apo-cytochrome b pre-mRNA processing protein YKL208w CBT1 apo-cytochrome b pre-mRNA processing protein YHL038c CBP2 apo-cytochrome b pre-mRNA processing protein 2 YDR173c ARG82 arginine metabolism transcription factor YKL112w ABF1 ARS-binding factor YLR298c YHC1 associated with the U1 snRNP complex YER029c SMB1 associated with U1 snRNP as part of the Sm-core that is common to all spliceosomal snRNPs YGR013w SNU71 associated with U1 snRNP, no counterpart in mammalian U1 snRNP YFL028c CAF16 ATP-binding cassette transporter family member YBL022c PIM1 ATP-dependent protease, mitochondrial YBR142w MAK5 ATP-dependent RNA helicase YOR204w DED1 ATP-dependent RNA helicase YPL119c DBP1 ATP-dependent RNA helicase YPL029w SUV3 ATP-dependent RNA helicase, mitochondrial YDR123c INO2 basic helix-loop-helix (BHLH) transcription factor YOL108c INO4 basic helix-loop-helix transcription factor YOR344c TYE7 basic helix-loop-helix transcription factor YOL067c RTG1 basic helix-loop-helix transcription factor that regulates CIT2 gene expression YBL103c RTG3 bHLH/zip transcription factor that regulates CIT2 gene expression YLR116w MSL5 branch point bridging protein YGL209w MIG2 C2H2 zinc-finger protein YLR433c CNA1 calcineurin B, catalytic subunit YML057w CMP2 calcineurin B, catalytic subunit YKL190w CNB1 calcineurin B, regulatory subunit YNL027w CRZ1 calcineurin responsive zinc-finger YIL033c BCY1 cAMP dependent protein kinase, regulatory subunit YJL164c TPK1 cAMP-dependent protein kinase 1, catalytic chain YPL203w TPK2 cAMP-dependent protein kinase 2, catalytic chain YKL166c TPK3 cAMP-dependent protein kinase 3, catalytic chain YKL139w CTK1 carboxy-terminal domain (CTD) kinase, alpha subunit YJL006c CTK2 carboxy-terminal domain (CTD) kinase, beta subunit YML112w CTK3 carboxy-terminal domain (CTD) kinase, gamma subunit YBL021c HAP3 CCAAT-binding factor subunit YGL237c HAP2 CCAAT-binding factor subunit YKL109w HAP4 CCAAT-binding factor subunit YOR358w HAP5 CCAAT-binding factor subunit YJR122w CAF17 CCR4 associated factor YKR036c CAF4 CCR4 associated factor YBR215w HPC2 cell cycle regulatory protein YDL220c CDC13 cell division control protein YOL123w HRP1 CF Ib (RNA3' Cleavage factor Ib) YBR195c MSI1 chromatin assembly complex, subunit p50 YML102w CAC2 chromatin assembly complex, subunit p60 YPR018w RLF2 chromatin assembly complex, subunit p90 YLR115w CFT2 cleavage and polyadenylation specificity factor, part of CF II YOR250c CLP1 cleavage/polyadenylation factor IA subunit YNL286w CUS2 cold sensitive U2 snRNA Suppressor YMR288w HSH155 component of a multiprotein splicing factor YGL094c PAN2 component of PAB1P-stimulated poly(A) ribonuclease YDR228c PCF11 component of pre-mRNA 3'-end processing factor CF I YGL044c RNA15 component of pre-mRNA 3'-end processing factor CF I YMR061w RNA14 component of pre-mRNA 3'-end processing factor CF I YJR093c FIP1 component of pre-mRNA polyadenylation factor PF I YLR277c YSH1 component of pre-mRNA polyadenylation factor PF I YPR070w MED1 component of RNA polymerase II holoenzyme and mediator subcomplex YPR056w TFB4 component of RNA polymerase transcription initiation TFIIH factor YNR023w SNF12 component of SWI/SNF global transcription activator complex YOR290c SNF2 component of SWI/SNF global transcription activator complex YPL016w SWI1 component of SWI/SNF global transcription activator complex YBR289w SNF5 component of SWI/SNF transcription activator complex YDR073w SNF11 component of SWI/SNF transcription activator complex YCR042c TSM1 component of TFIID complex YHR099w TRA1 component of the Ada-Spt transcriptional regulatory complex YPR072w NOT5 component of the NOT protein complex YKL025c PAN3 component of the PAB1P-dependent poly(A) ribonuclease YPL011c TAF47 component of the TBP-associated protein complex YEL026w SNU13 component of the U4/U6.U5 snRNP YLR192c HCR1 component of translation initiation factor eIF3, has similarity to human eIF3 p35 subunit YOR308c SNU66 component of U4/U6.U5 snRNP YGL166w CUP2 copper-dependent transcription factor YNL232w CSL4 core component of the 3'-5' exosome Q0050 AI1 COX1 intron 1 protein Q0055 AI2 COX1 intron 2 protein YNL167c SKO1 cre-binding bzip protein YOL001w PHO80 cyclin YPL042c SSN3 cyclin-dependent CTD kinase YPL031c PHO85 cyclin-dependent protein kinase YDL108w KIN28 cyclin-dependent ser/thr protein kinase YDR334w SWR1 DEAH-box protein, putative RNA helicase YNL186w UBP10 derepression of telomeric silencing YLR226w BUR2 divergent CDK-cyclin complex Q0060 AI3 DNA endonuclease Q0065 AI4 DNA endonuclease Q0070 AI5_ALPHA DNA endonuclease AI5_ALPHA Q0160 SCEI DNA endonuclease in 21S rRNA intron YIL143c SSL2 DNA helicase YER171w RAD3 DNA helicase/ATPase YDR121w DPB4 DNA polymerase II (epsilon) 4th subunit YDR217c RAD9 DNA repair checkpoint protein YNL216w RAP1 DNA-binding protein with repressor and activator activity YOR210w RPB10 DNA-directed polymerase I, II, III 8.3 subunit YOR224c RPB8 DNA-directed RNA polymerase I, II, III 16 KD subunit YPR187w RPO26 DNA-directed RNA polymerase I, II, III 18 KD subunit YBR154c RPB5 DNA-directed RNA polymerase I, II, III 25 KD subunit YLR418c CDC73 DNA-directed RNA polymerase II accessory protein YNL025c SSN8 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog YDR308c SRB7 DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit YER022w SRB4 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit YGR104c SRB5 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit YHR041c SRB2 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit YOL051w GAL11 DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit YCR081w SRB8 DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit YDR443c SSN2 DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit YLR071c RGR1 DNA-directed RNA polymerase II holoenzyme subunit YBR279w PAF1 DNA-directed RNA polymerase II regulator YOL005c RPB11 DNA-directed RNA polymerase II subunit, 13.6 kD YBR253w SRB6 DNA-directed RNA polymerase II suppressor protein YGL070c RPB9 DNA-directed RNA polymerase II, 14.2 KD subunit YOR151c RPB2 DNA-directed RNA polymerase II, 140 kDa chain YDR404c RPB7 DNA-directed RNA polymerase II, 19 KD subunit YDL140c RPO21 DNA-directed RNA polymerase II, 215 KD subunit YJL140w RPB4 DNA-directed RNA polymerase II, 32 kDa subunit YFL036w RPO41 DNA-directed RNA polymerase, mitochondrial YHR143w-a RPC10 DNA-directed RNA polymerases I, II, III 7.7 KD subunit YIL021w RPB3 DNA-directed RNA-polymerase II, 45 kDa YGL208w SIP2 dominant suppressor of some ts mutations in RPO21 and PRP4 YOR047c STD1 dosage-dependent modulator of glucose repression YKL020c SPT23 dosage-dependent suppressor of Ty-induced promotor mutations YDR390c UBA2 E1-like (ubiquitin-activating) enzyme YPL046c ELC1 Elongin C transcription elongation factor YDR473c PRP3 essential splicing factor YOR319w HSH49 essential yeast splicing factor YHR154w ESC4 Establishes Silent Chromatin YIL131c FKH1 forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle YER159c BUR6 functional homolog of human NC2alpha YDR397c NCB2 functional homolog of human NC2beta/Dr1 YPL037c EGD1 GAL4 DNA-binding enhancer protein YBR020w GAL1 galactokinase YDR009w GAL3 galactokinase YGL097w SRM1 GDP/GTP exchange factor for GSP1P/GSP2P YGL207w SPT16 general chromatin factor YIL038c NOT3 general negative regulator of transcription, subunit 3 YBR112c CYC8 general repressor of transcription YCR084c TUP1 general transcription repressor YDR176w NGG1 general transcriptional adaptor or co-activator YDR392w SPT3 general transcriptional adaptor or co-activator YDR448w ADA2 general transcriptional adaptor or co-activator YBR045c GIP1 GLC7-interacting protein YNL236w SIN4 global regulator protein YHL025w SNF6 global transcription activator YER027c GAL83 glucose repression protein YNL199c GCR2 glycolytic genes transcriptional activator YOR076c SKI7 GTPase with function in 3'-to-5' degradation of mRNA YGL073w HSF1 heat shock transcription factor YJR036c HUL4 hect domain E3 ubiquitin-protein ligase YMR290c HAS1 helicase associated with SET1P YPR065w ROX1 heme-dependent transcriptional repressor of hypoxic genes YDR006c SOK1 high copy suppressor of a cyclic AMP-dependent protein kinase mutant YJR147w HMS2 High-copy MEP2 Suppressor YMR070w MOT3 high-copy suppressor of MOT1-SPT3 synthetic lethality YGR252w GCN5 histone acetyltransferase YOR244w ESA1 histone acetyltransferase YEL066w HPA3 histone and other protein acetyltransferase YPR193c HPA2 Histone and other Protein Acetyltransferase YNL021w HDA1 histone deacetylase A YNL330c RPD3 histone deacetylase B YDR225w HTA1 histone H2A YBL003c HTA2 histone H2A.2 YDR224c HTB1 histone H2B YBL002w HTB2 histone H2B.2 YBR010w HHT1 histone H3 YNL031c HHT2 histone H3 YBR009c HHF1 histone H4 YNL030w HHF2 histone H4 YBL008w HIR1 histone transcription regulator YOR038c HIR2 histone transcription regulator YDL106c PHO2 homeodomain protein YOL055c THI20 hydroxymethylpyrimidine phosphate (HMP-P) kinase YDR138w HPR1 hyperrecombination protein related to TOP1P YKL159c RCN1 inhibitor of calcineurin YJL089w SIP4 interacts with SNF1 protein kinase YER032w FIR1 interacts with the poly(A) polymerase in the two hybrid system YKL032c IXR1 intrastrand crosslink recognition protein and transcription factor YBR081c SPT7 involved in alteration of transcription start site selection YJR140c HIR3 involved in cell cycle regulation of histone transcription YKR072c SIS2 involved in cell cycle-specific gene expression YHR119w SET1 involved in chromatin-mediated gene regulation YPL177c CUP9 involved in copper homeostasis repression of protein import YER088c DOT6 involved in derepression of telomeric silencing YIL010w DOT5 involved in derepression of telomeric silencing YIR021w MRS1 involved in mitochondrial RNA splicing of COB mRNA YGR158c MTR3 involved in mRNA transport YIL128w MET18 involved in NER repair and RNA polymerase II transcription YOR148c SPP2 involved in pre-mRNA processing YDR439w LRS4 involved in rDNA silencing YNL251c NRD1 involved in regulation of nuclear pre-mRNA abundance YIL046w MET30 involved in regulation of sulfur assimilation genes and cell cycle progression YML049c RSE1 involved in RNA splicing and ER to Golgi transport YDL153c SAS10 involved in silencing YDR363w ESC2 involved in silencing YMR127c SAS2 involved in silencing at HMR YGR097w ASK10 involved in SKN7P-dependent transcription YPR057w BRR1 involved in snRNP biogenesis YGL120c PRP43 involved in spliceosome disassembly YIR018w YAP5 involved in transcription activation YOL028c YAP7 involved in transcription activation YLR039c RIC1 involved in transcription of ribosomal proteins and ribosomal RNA YNL097c PHO23 involved in transcriptional regulation of PHO5 YGL071w RCS1 iron-regulated transcriptional repressor YJR060w CBF1 kinetochore protein YMR125w STO1 large subunit of the nuclear cap-binding protein complex CBC YDR159w SAC3 leucine permease transcriptional regulator YLR382c NAM2 leucine--tRNA ligase precursor, mitochondrial YGR100w MDR1 MAC1P interacting protein YBR182c SMP1 MADS-box transcription factor YNL016w PUB1 major polyadenylated RNA-binding protein of nucleus and cytoplasm YBR297w MAL33 maltose fermentation regulatory protein YGR288w MAL13 maltose pathway regulatory protein YCR039c MATALPHA2 mating type regulatory protein, expressed copy at MAT locus YCR040w MATALPHA1 mating type regulatory protein, expressed copy at MAT locus YCL066w HMLALPHA1 mating type regulatory protein, silenced copy at HML YIR033w MGA2 may be involved in the remodeling chromatin structure YGL025c PGD1 mediator complex subunit YMR112c MED11 mediator complex subunit YHR086w NAM8 meiotic recombination protein YNL210w MER1 meiotic recombination protein YHL027w RIM101 meiotic regulatory protein YOL135c MED7 member of RNA Polymerase II transcriptional regulation mediator complex YGR056w RSC1 member of RSC complex, which remodels the structure of chromatin YKR008w RSC4 member of RSC complex, which remodels the structure of chromatin YLR357w RSC2 member of RSC complex, which remodels the structure of chromatin YJR032w CPR7 member of the cyclophilin family YLR216c CPR6 member of the cyclophilin family YHR211w FLO5 member of the FLO1P family of flocculation proteins YDR191w HST4 member of the SIR2P family of putative NAD-dependent histone deacetylases YOL148c SPT20 member of the TBP class of SPT proteins that alter transcription site selection YMR021c MAC1 metal binding activator YJL056c ZAP1 metalloregulatory protein involved in zinc-responsive transcriptional regulation YLR131c ACE2 metallothionein expression activator YMR023c MSS1 mitochondrial GTPase involved in expression of COX1 YJR045c SSC1 mitochondrial heat shock protein 70-related protein YDL044c MTF2 mitochondrial protein involved in mRNA splicing and protein synthesis YBR026c (MRF1) mitochondrial respiratory function protein YBR236c ABD1 mRNA cap methyltransferase YOL149w DCP1 mRNA decapping enzyme YGL130w CEG1 mRNA guanylyltransferase (mRNA capping enzyme, alpha subunit) Q0110 BI2 mRNA maturase BI2 Q0115 BI3 mRNA maturase BI3 Q0120 BI4 mRNA maturase BI4 YER165w PAB1 mRNA polyadenylate-binding protein YKL009w MRT4 mRNA turnover 4 YER161c SPT2 multifunctional HMG-like chromatin protein YGL173c KEM1 multifunctional nuclease YOR298c-a MBF1 multiprotein bridging factor mediates GCN4-dependent transcriptional activation YML051w GAL80 negative regulator for expression of galactose-induced genes YKL185w ASH1 negative regulator of HO transcription YPL139c UME1 negative regulator of meiosis YHL020c OPI1 negative regulator of phospholipid biosynthesis pathway YDR464w SPP41 negative regulator of PRP3 and PRP4 gene expression YGL151w NUT1 negative transcription regulator from artifical reporters YPR168w NUT2 negative transcription regulator from artifical reporters YDR207c UME6 negative transcriptional regulator YGL221c NIF3 NGG1P-interacting factor 3 YLL036c PRP19 non-snRNP sliceosome component required for DNA repair YGL122c NAB2 nuclear poly(A)-binding protein YCR093w CDC39 nuclear protein YGL115w SNF4 nuclear regulatory protein YML065w ORC1 origin recognition complex, 104 KD subunit YHR118c ORC6 origin recognition complex, 50 KD subunit YNL261w ORC5 origin recognition complex, 50 kDa subunit YPR162c ORC4 origin recognition complex, 56 KD subunit YLL004w ORC3 origin recognition complex, 62 kDa subunit YBR060c ORC2 origin recognition complex, 72 kDa subunit YAL051w OAF1 peroxisome proliferating transcription factor YOR363c PIP2 peroxisome proliferating transcription factor YBL005w PDR3 pleiotropic drug resistance regulatory protein YNL076w MKS1 pleiotropic regulatory factor YKR025w RPC37 Pol III transcription YKR002w PAP1 poly(A) polymerase YPL190c NAB3 polyadenylated RNA-binding protein YNL317w PFS2 polyadenylation factor I subunit 2 required for mRNA 3'-end processing, bridges two mRNA 3'-end processing factors YKL015w PUT3 positive activator of the proline utilisation pathway YDL080c THI3 positive regulation factor of thiamin metabolism YGL192w IME4 positive transcription factor for IME2 YDR421w ARO80 positive transcription regulator of ARO9 and ARO10 YDR017c KCS1 potential transcription factor of the BZIP type YDR301w CFT1 pre-mRNA 3'-end processing factor CF II YBR237w PRP5 pre-mRNA processing RNA-helicase YAL032c PRP45 pre-mRNA splicing factor YDL043c PRP11 pre-mRNA splicing factor YER013w PRP22 pre-mRNA splicing factor YGR075c PRP38 pre-mRNA splicing factor YJL203w PRP21 pre-mRNA splicing factor YJR050w ISY1 pre-mRNA splicing factor YKL074c MUD2 pre-mRNA splicing factor YML046w PRP39 pre-mRNA splicing factor YMR268c PRP24 pre-mRNA splicing factor YDL030w PRP9 pre-mRNA splicing factor (snRNA-associated protein) YDR088c SLU7 pre-mRNA splicing factor affecting 3' splice site choice YDR243c PRP28 pre-mRNA splicing factor RNA helicase of DEAD box family YGR091w PRP31 pre-mRNA splicing protein YAL043c PTA1 pre-tRNA processing protein / PF I subunit YDR463w STP1 pre-tRNA splicing protein, transcription factor YDL084w SUB2 probably involved in pre-mRNA splicing YJR017c ESS1 processing/termination factor 1 YPR137w RRP9 protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing YPR107c YTH1 protein of the 3' processing complex YGL194c HOS2 putative histone deacetylase YDL098c SNU23 Putative RNA binding zinc finger protein YBL066c SEF1 putative transcription factor YBR275c RIF1 RAP1-interacting factor 1 YGL244w RTF1 regulates DNA binding properties of TBP YFR029w PTR3 regulator of expression of the PTR2, GAP1 and BAP2 genes YKL038w RGT1 regulator of glucose-induced genes YBR240c THI2 regulator of the thiamine biosynthetic genes YDR257c RMS1 regulatory protein YNL139c RLR1 regulatory protein YMR016c SOK2 regulatory protein in the PKA signal transduction pathway YDR213w UPC2 regulatory protein involved in control of sterol uptake YCL055w KAR4 regulatory protein required for pheromone induction of karyogamy genes YDR028c REG1 regulatory subunit for protein phosphatase GLC7P YLR176c RFX1 repressor of DNA damage-inducible genes YIL106w MOB1 required for completion of mitosis and maintenance of ploidy YER109c FLO8 required for diploid filamentous growth YNR052c POP2 required for glucose derepression YER120w SCS2 required for inositol metabolism YMR179w SPT21 required for normal transcription at a number of loci YKL093w MBR1 required for optimal growth on glycerol YCL054w SPB1 required for ribosome synthesis, putative methylase YDR195w REF2 RNA 3'-end formation protein YPL228w CET1 RNA 5'-triphosphatase (mRNA capping enzyme, beta subunit) YMR180c CTL1 RNA 5'-triphosphatase with manganese- or cobalt-dependent NTPase activities YLR107w REX3 RNA exonuclease, member of the family of 3' -5' exonucleases YDR194c MSS116 RNA helicase of the DEAD box family, mitochondrial YKL078w DHR2 RNA helicase, involved in ribosomal RNA maturation YER172c BRR2 RNA helicase-related protein YHR058c MED6 RNA polymerase II transcriptional regulation mediator YDR045c RPC11 RNA polymerase III subunit C11, required for RNA cleavage activity and transcription termination YPL007c TFC8 RNA Polymerase III transcription initiation factor TFIIIC (tau), 60 kDa subunit YMR228w MTF1 RNA polymerase specific factor, mitochondrial YJL133w MRS3 RNA splicing protein and member of the mitochondrial carrier family (MCF) YKR052c MRS4 RNA splicing protein and member of the mitochondrial carrier family (MCF) YOR334w MRS2 RNA splicing protein and member of the mitochondrial carrier family (MCF) YKR086w PRP16 RNA-dependent ATPase YNR011c PRP2 RNA-dependent ATPase of DEAH box family YDR190c RVB1 RUVB-like protein YPL235w RVB2 RUVB-like protein YMR139w RIM11 ser/thr protein kinase YGR092w DBF2 ser/thr protein kinase related to DBF20P YBL052c SAS3 silencing protein YOL068c HST1 silencing protein YOR025w HST3 silencing protein YDR227w SIR4 silencing regulatory and DNA-repair protein YLR442c SIR3 silencing regulatory and DNA-repair protein YKR101w SIR1 silencing regulatory protein YDL042c SIR2 silencing regulatory protein and DNA-repair protein YKL070w similarity to B.subtilis transcriptional regulatory protein YDL070w BDF2 similarity to bromodomain protein BDF1P YOR179c similarity to BRR5 protein YOL042w NGL1 similarity to CCR4 protein YIR001c SGN1 similarity to D.melanogaster RNA binding protein YBR061c similarity to E.coli ftsJ protein YGR249w MGA1 similarity to heat shock transcription factors YPL015c HST2 similarity to HST1P and SIR2P YNL107w YAF9 similarity to human AF-9 protein YPR068c HOS1 similarity to human histone deacetylase HD1 YAR044w OSH1 similarity to human oxysterol binding protein (OSBP) YAR003w FUN16 similarity to human RB protein binding protein YER169w RPH1 similarity to human retinoblastoma binding protein 2 YJR119c similarity to human retinoblastoma binding protein 2 YOL133w HRT1 similarity to Lotus RING-finger protein YER028c similarity to MIG1P YER130c similarity to MSN2P and weak similarity to MSN4P YER184c similarity to multidrug resistance proteins PDR3P and PDR1P YHR015w MIP6 similarity to PES4 a PAB-like protein Q0255 similarity to Podospora cytb intron 1a and coII intron protein 2 YPR115w similarity to probable transcription factor ASK10P, and to YNL047c and YIL105c YIL130w similarity to PUT3P and to hypothetical protein YJL206c YCR020c PET18 similarity to regulatory protein YGL150c INO80 similarity to SNF2P and human SNF2alpha YCR106w similarity to transcription factor YLL054c similarity to transcription factor PIP2P YDR303c RSC3 similarity to transcriptional regulator proteins YJL103c similarity to YBR239c YJL206c similarity to YIL130p and PUT3P YHR178w STB5 SIN3 binding protein YKL072w STB6 SIN3 binding protein YDR169c STB3 SIN3 protein-binding protein YMR053c STB2 SIN3P binding protein YNL309w STB1 SIN3P binding protein YBR103w SIF2 SIR4P interacting protein YBL026w LSM2 Sm-like (Lsm) protein YDR378c LSM6 Sm-like (Lsm) protein YER112w LSM4 Sm-like (Lsm) protein YER146w LSM5 Sm-like (Lsm) protein YJL124c LSM1 Sm-like (Lsm) protein YLR438c-a LSM3 Sm-like (Lsm) protein YNL147w LSM7 Sm-like (Lsm) protein YPL178w CBC2 small subunit of the nuclear cap-binding protein complex CBC YGR074w SMD1 snRNA-associated protein YPR182w SMX3 snRNA-associated protein of the SM family YFR005c SAD1 SnRNP assembly defective YFL017w-a SMX2 snRNP G protein (the homologue of the human Sm-G) YBR055c PRP6 snRNP(U4/U6)-associated splicing factor YOR159c SME1 spliceosomal snRNA-associated Sm core protein required for mRNA splicing, also likely associated with telomerase TLC1 RNA YLR147c SMD3 spliceosomal snRNA-associated Sm core protein required for pre-mRNA splicing YBR188c NTC20 splicing factor YJR022w LSM8 splicing factor YKL012w PRP40 splicing factor YPR101w SNT309 splicing factor YPR134w MSS18 splicing protein YGR222w PET54 splicing protein and translational activator, mitochondrial YLR399c BDF1 sporulation protein YNL204c SPS18 sporulation-specific zinc-finger protein YMR037c MSN2 stress responsive regulatory protein YIL101c XBP1 stress-induced transcriptional repressor YBR245c ISW1 strong similarity to D.melanogaster iswi protein YDR026c strong similarity to DNA-binding protein REB1P YOR304w ISW2 strong similarity to Drosophila ISW1 and human SNF2P homolog YLR117c CLF1 strong similarity to Drosophila putative cell cycle control protein crn YBR238c strong similarity to general chromatin factor SPT16P YGL236c MTO1 strong similarity to gidA E.coli protein YFL052w strong similarity to Mal63p, YPR196w and MAL13P YPL060w LPE10 strong similarity to MRS2P YPR196w strong similarity to regulatory protein Mal63p YLR228c ECM22 strong similarity to YDR213w, weak similarity to LYS14P YHR056c RSC30 strong similarity to YHR054c YML081w strong similarity to ZMS1 protein YPL086c ELP3 subunit of elongator/RNAPII holoenzyme with histone acetylase activity YGL133w ITC1 subunit of ISW2 chromatin remodelling complex YNR010w CSE2 subunit of RNA polymerase II mediator complex YMR263w SAP30 subunit of the histone deacetylase B complex YEL056w HAT2 subunit of the major yeast histone acetyltransferase YCR052w RSC6 subunit of the RSC complex YFR037c RSC8 subunit of the RSC complex YIL126w STH1 subunit of the RSC complex YLR321c SFH1 subunit of the RSC complex YOR213c SAS5 subunit of the RSC complex YGL254w FZF1 sulfite resistance protein YNL222w SSU72 suppressor of cs mutant of SUA7 YPR125w MRS7 suppressor of MRS2-1 mutation YBR152w SPP381 Suppressor of Pre-mRNA Processing mutant YDR310c SUM1 suppressor of SIR mutations YDR416w SYF1 synthetic lethal with CDC40 YGR129w SYF2 synthetic lethal with CDC40 YML114c TAF65 TBP Associated Factor 65 KDa YKL058w TOA2 TFIIA subunit (transcription initiation factor), 13.5 kD YOR194c TOA1 TFIIA subunit (transcription initiation factor), 32 kD YPR086w SUA7 TFIIB subunit (transcription initiation factor), factor E YBR198c TAF90 TFIID and SAGA subunit YDR145w TAF61 TFIID and SAGA subunit YDR167w TAF25 TFIID and SAGA subunit YGL112c TAF60 TFIID and SAGA subunit YMR236w TAF17 TFIID and SAGA subunit YGR274c TAF145 TFIID subunit (TBP-associated factor), 145 kD YML098w TAF19 TFIID subunit (TBP-associated factor), 19 kD YML015c TAF40 TFIID subunit (TBP-associated factor), 40KD YMR227c TAF67 TFIID subunit (TBP-associated factor), 67 kD YKR062w TFA2 TFIIE subunit (transcription initiation factor), 43 KD YKL028w TFA1 TFIIE subunit (transcription initiation factor), 66 kD YMR277w FCP1 TFIIF interacting component of CTD phosphatase YGR186w TFG1 TFIIF subunit (transcription initiation factor), 105 kD YPL129w ANC1 TFIIF subunit (transcription initiation factor), 30 kD YGR005c TFG2 TFIIF subunit (transcription initiation factor), 54 kD YDR311w TFB1 TFIIH subunit (transcription initiation factor), 75 kD YPR025c CCL1 TFIIH subunit (transcription initiation factor), cyclin C component YLR005w SSL1 TFIIH subunit (transcription initiation factor), factor B YDR460w TFB3 TFIIH subunit (transcription/repair factor) YPL122c TFB2 TFIIH subunit (transcription/repair factor) YGL043w DST1 TFIIS (transcription elongation factor) YER148w SPT15 the TATA-binding protein TBP YCR077c PAT1 topoisomerase II-associated protein YGR063c SPT4 transcription elongation protein YGR116w SPT6 transcription elongation protein YML010w SPT5 transcription elongation protein YBL093c ROX3 transcription factor YBR049c REB1 transcription factor YCR065w HCM1 transcription factor YDL165w CDC36 transcription factor YDR146c SWI5 transcription factor YER111c SWI4 transcription factor YFL031w HAC1 transcription factor YFR034c PHO4 transcription factor YGL013c PDR1 transcription factor YKL043w PHD1 transcription factor YKR099w BAS1 transcription factor YLR098c CHA4 transcription factor YLR182w SWI6 transcription factor YLR256w HAP1 transcription factor YLR451w LEU3 transcription factor YOR140w SFL1 transcription factor YOR162c YRR1 transcription factor YPL248c GAL4 transcription factor YFL021w GAT1 transcription factor for nitrogen regulation YER040w GLN3 transcription factor for positive nitrogen regulation YML099c ARG81 transcription factor involved in arginine metabolism YMR042w ARG80 transcription factor involved in arginine metabolism YMR280c CAT8 transcription factor involved in gluconeogenesis YGL181w GTS1 transcription factor of the GCS1P/GLO3P/SPS18P family YMR043w MCM1 transcription factor of the MADS box family YPL089c RLM1 transcription factor of the MADS box family YLR014c PPR1 transcription factor regulating pyrimidine pathway YJR094c IME1 transcription factor required for sporulation YHR206w SKN7 transcription factor with similarity to HSF1P YJR127c ZMS1 transcription factor with similarity to regulatory protein ARD1P YDR259c YAP6 transcription factor, of a fungal-specific family of bzip proteins YHL009c YAP3 transcription factor, of a fungal-specific family of bzip proteins YDL056w MBP1 transcription factor, subunit of the MBF factor YOR174w MED4 transcription regulation mediator YJL127c SPT10 transcription regulatory protein YJL176c SWI3 transcription regulatory protein YOL004w SIN3 transcription regulatory protein YPL082c MOT1 transcriptional accessory protein YDR423c CAD1 transcriptional activator YHR084w STE12 transcriptional activator YKL062w MSN4 transcriptional activator YOL116w MSN1 transcriptional activator YOR028c CIN5 transcriptional activator YPL075w GCR1 transcriptional activator YIR023w DAL81 transcriptional activator for allantoin and GABA catabolic genes YNL314w DAL82 transcriptional activator for allantoin catabolic genes YDL170w UGA3 transcriptional activator for GABA catabolic genes YML007w YAP1 transcriptional activator involved in oxidative stress response YEL009c GCN4 transcriptional activator of amino acid biosynthetic genes YOL089c HAL9 transcriptional activator of ENA1 YDR034c LYS14 transcriptional activator of lysine pathway genes YIL129c TAO3 Transcriptional Activator of OCH1 YIR017c MET28 transcriptional activator of sulfur amino acid metabolism YNL103w MET4 transcriptional activator of sulfur metabolism YPR104c FHL1 transcriptional activator of the forkhead/hnf3 family YLR055c SPT8 transcriptional adaptor or co-activator YMR039c SUB1 transcriptional coactivator YPL254w HFI1 transcriptional coactivator YBR193c MED8 transcriptional regulation mediator YDL005c MED2 transcriptional regulation mediator YAL021c CCR4 transcriptional regulator YER164w CHD1 transcriptional regulator YIL084c SDS3 transcriptional regulator YNL012w SPO1 transcriptional regulator involved in sporulation YDR160w SSY1 transcriptional regulator of several transporter genes YDR253c MET32 transcriptional regulator of sulfur amino acid metabolism YPL038w MET31 transcriptional regulator of sulfur amino acid metabolism YER068w MOT2 transcriptional repressor YGL035c MIG1 transcriptional repressor YJL110c GZF3 transcriptional repressor YKR034w DAL80 transcriptional repressor for allantoin and GABA catabolic genes YDR043c NRG1 transcriptional repressor for glucose repression of STA1 gene expression YMR182c RGM1 transcriptional repressor protein YBR083w TEC1 Ty transcription activator YOR337w TEA1 TY1 enhancer activator YIL061c SNP1 U1 small nuclear ribonucleoprotein YDR240c SNU56 U1 snRNA protein, no counterpart in mammalian snRNP YDR235w PRP42 U1 snRNP associated protein, required for pre-mRNA splicing YLR275w SMD2 U1 snRNP protein of the Sm class YBR119w MUD1 U1 snRNP-specific A protein YPL213w LEA1 U2 A' snRNP protein YIR009w MSL1 U2 snRNA-associated protein with similarity to U2B YMR240c CUS1 U2 snRNP protein YPR178w PRP4 U4/U6 snRNP 52 KD protein YGR006w PRP18 U5 snRNA-associated protein YHR165c PRP8 U5 snRNP protein, pre-mRNA splicing factor YGL141w HUL5 ubiquitin-protein ligase (E3) YER151c UBP3 ubiquitin-specific proteinase YLR013w GAT3 weak similarity to nitrogen regulatory proteins YGR200c ELP2 weak similarity to rape guanine nucleotide regulatory protein YLR278c weak similarity to regulatory proteins YML076c weak similarity to transcription factor YBR033w weak similarity to transcription factors YKR064w weak similarity to transcription factors YLR266c weak similarity to transcription factors YKL222c weak similarity to transcription factors, similarity to finger proteins YOR162c, YOR172w and YLR266c YBL054w weak similarity to transforming protein (B-myb) YMR019w STB4 weak similarity to YIL130w, PUT3P and other transcription factors YDL087c LUC7 yeast U1 snRNP protein with a role in 5' splice site recognition YER122c GLO3 zinc finger protein YDR216w ADR1 zinc-finger transcription factor YGR044c RME1 zinc-finger transcription factor Back to MIPS Yeast Functional Categories Page. 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