@comment{{This file has been generated by bib2bib 1.97}}
@comment{{Command line: bib2bib ../bibli.bib -c 'subject:"bionet" or keywords:"bionet"' -ob tmp.bib}}
@article{Akutsu2000Inferring,
author = {T. Akutsu and S. Miyano and S. Kuhara},
title = {Inferring qualitative relations in genetic networks and metabolic
pathways},
journal = {Bioinformatics},
year = {2000},
volume = {16},
pages = {727--734},
number = {8},
pdf = {../local/Akutsu2000Inferring.pdf},
file = {Akutsu2000Inferring.pdf:local/Akutsu2000Inferring.pdf:PDF},
subject = {bionet},
url = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/16/8/727}
}
@article{Barabasi1999Emergence,
author = {Barab{\'a}si, A.-L. and Albert, R.},
title = {Emergence of scaling in random networks},
journal = {Science},
year = {1999},
volume = {286},
pages = {509--512},
abstract = {Systems as diverse as genetic networks or the World Wide Web are best
described as networks with complex topology. A common property of
many large networks is that the vertex connectivities follow a scale-free
power-law distribution. This feature was found to be a consequence
of two generic mechanisms: (i) networks expand continuously by the
addition of new vertices, and (ii) new vertices attach preferentially
to sites that are already well connected. A model based on these
two ingredients reproduces the observed stationary scale-free distributions,
which indicates that the development of large networks is governed
by robust self-organizing phenomena that go beyond the particulars
of the individual systems.},
pdf = {../local/Barabasi1999Emergence.pdf},
file = {Barabasi1999Emergence.pdf:Barabasi1999Emergence.pdf:PDF},
subject = {bionet},
url = {http://www.sciencemag.org/cgi/reprint/286/5439/509.pdf}
}
@article{Goto1998LIGAND:,
author = {S. Goto and T. Nishioka and M. Kanehisa},
title = {L{IGAND}: chemical database for enzyme reactions},
journal = {Bioinformatics},
year = {1998},
volume = {14},
pages = {591--599},
pdf = {../local/goto98.pdf},
file = {goto98.pdf:local/goto98.pdf:PDF},
subject = {bionet},
url = {http://bioinformatics.oupjournals.org/cgi/reprint/14/7/591}
}
@article{Goto2002LIGAND:,
author = {S. Goto and Y. Okuno and M. Hattori and T. Nishioka and M. Kanehisa},
title = {L{IGAND}: database of chemical compounds and reactions in biological
pathways},
journal = {Nucleic {A}cids {R}es.},
year = {2002},
volume = {30},
pages = {402--404},
pdf = {../local/goto02.pdf},
file = {goto02.pdf:local/goto02.pdf:PDF},
subject = {bionet},
url = {http://nar.oupjournals.org/cgi/content/full/30/1/402}
}
@article{Guelzim2002Topological,
author = {Guelzim, N. and Bottani, S. and Bourgine, P. and K{\'e}p{\`e}s, F.},
title = {Topological and causal structure of the yeast transcriptional regulatory
network},
journal = {Nat. {G}enet.},
year = {2002},
volume = {31},
pages = {60--63},
pdf = {../local/guel02.pdf},
file = {guel02.pdf:local/guel02.pdf:PDF},
subject = {bionet},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v31/n1/full/ng873.html}
}
@article{Hanisch2002Co-clustering,
author = {D. Hanisch and A. Zien and R. Zimmer and T. Lengauer},
title = {Co-clustering of biological networks and gene expression data},
journal = {Bioinformatics},
year = {2002},
annote = {To appear},
subject = {microarraybionet},
url = {http://cartan.gmd.de/~hanisch/paper/CoClustering.pdf}
}
@article{Ito2001comprehensive,
author = {Ito, T. and Chiba, T. and Ozawa, R. and Yoshida, M. and Hattori,
M. and Sakaki, Y.},
title = {A comprehensive two-hybrid analysis to explore the yeast protein
interactome},
journal = {Proc. {N}atl. {A}cad. {S}ci. {USA}},
year = {2001},
volume = {98},
pages = {4569--4574},
number = {8},
pdf = {../local/ito01.pdf},
file = {ito01.pdf:local/ito01.pdf:PDF},
subject = {bionet},
url = {http://www.pnas.org/cgi/content/full/98/8/4569}
}
@article{Ito2000Toward,
author = {Ito, T. and Tashiro, K. and Muta, S. and Ozawa, R. and Chiba, T.
and Nishizawa, M. and Yamamoto, K. and Kuhara, S. and Sakaki, Y.},
title = {Toward a protein-protein interaction map of the budding yeast: {A}
comprehensive system to examine two-hybrid interactions in all possible
combinations between the yeast proteins},
journal = {Proc. {N}atl. {A}cad. {S}ci. {USA}},
year = {2000},
volume = {93},
pages = {1143--1147},
number = {3},
pdf = {../local/ito00.pdf},
file = {ito00.pdf:local/ito00.pdf:PDF},
subject = {bionet},
url = {http://www.pnas.org/cgi/content/full/97/3/1143}
}
@article{Jeong2001Lethality,
author = {H. Jeong and S. P. Mason and A.-L. Barab{\'a}si and Z. N. Oltvai},
title = {Lethality and centrality in protein networks},
journal = {Nature},
year = {2001},
volume = {411},
pages = {41--42},
pdf = {../local/jeon01.pdf},
file = {jeon01.pdf:local/jeon01.pdf:PDF},
subject = {bionet},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v411/n6833/full/411041a0_fs.html&content_filetype=PDF}
}
@article{Jeong2000large-scale,
author = {H. Jeong and B. Tombor and R. Albert and Z. N. Oltvai and A.-L. Barab{\'a}si},
title = {The large-scale organization of metabolic networks},
journal = {Nature},
year = {2000},
volume = {407},
pages = {651--654},
pdf = {../local/jeon00.pdf},
file = {jeon00.pdf:local/jeon00.pdf:PDF},
subject = {bionet},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v407/n6804/full/407651a0_fs.html&content_filetype=PDF}
}
@article{Kanehisa1997database,
author = {M. Kanehisa},
title = {A database for post-genome analysis},
journal = {Trends {G}enet.},
year = {1997},
volume = {13},
pages = {375--376},
doi = {10.1016/S0168-9525(97)01223-7},
pdf = {../local/Kanehisa1997database.pdf},
file = {Kanehisa1997database.pdf:local/Kanehisa1997database.pdf:PDF},
subject = {bionet},
url = {http://dx.doi.org/10.1016/S0168-9525(97)01223-7}
}
@article{Kanehisa2002KEGG,
author = {M. Kanehisa and S. Goto and S. Kawashima and A. Nakaya},
title = {The {KEGG} databases at {G}enome{N}et},
journal = {Nucleic {A}cids {R}es.},
year = {2002},
volume = {30},
pages = {42--46},
pdf = {../local/kane02.pdf},
file = {kane02.pdf:local/kane02.pdf:PDF},
subject = {bionet},
url = {http://nar.oupjournals.org/cgi/content/full/30/1/42}
}
@unpublished{Kim2001Evolving,
author = {J. Kim and P.L. Krapivsky and B. Kahng and S. Redner},
title = {Evolving protein interaction networks},
note = {E-print cond-mat/0203167},
year = {2001},
pdf = {../local/kim02.pdf},
file = {kim02.pdf:local/kim02.pdf:PDF},
subject = {bionetprot},
url = {http://xxx.lanl.gov/abs/cond-mat/0203167}
}
@article{Maslov2002Specificity,
author = {Maslov, S. and Sneppen, K.},
title = {Specificity and stability in topology of protein networks},
journal = {Science},
year = {2002},
volume = {296},
pages = {910--913},
pdf = {../local/masl02.pdf},
file = {masl02.pdf:local/masl02.pdf:PDF},
subject = {bionet},
url = {http://www.sciencemag.org/cgi/reprint/296/5569/910.pdf}
}
@techreport{Pastor-Satorras2002Evolving,
author = {Pastor-Satorras, R. and Smith, E. D. and Sol{\'e}, R. V.},
title = {Evolving protein interaction networks through gene duplication},
institution = {Santa Fe Institute},
year = {2002},
note = {Working paper 02-02-008},
pdf = {../local/past02.pdf},
file = {past02.pdf:local/past02.pdf:PDF},
subject = {bionetprot},
url = {http://www.santafe.edu/sfi/publications/Abstracts/02-02-008abs.html}
}
@article{Podani2001Comparable,
author = {J. Podani and Z.N. Oltvai and H. Jeong and B. Tombor and A.-L. Barab{\'a}si
and E. Szathm{\'a}ry},
title = {Comparable system-level organization of {A}rchaea and {E}ukaryotes},
journal = {Nat. {G}enet.},
year = {2001},
volume = {29},
pages = {54--56},
pdf = {../local/poda01.pdf},
file = {poda01.pdf:local/poda01.pdf:PDF},
subject = {bionet},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/ng/journal/v29/n1/full/ng708.html&filetype=PDF}
}
@article{Qian2001Protein,
author = {Qian, J. and Luscombe, N. M. and Gerstein, M.},
title = {Protein {F}old and {F}amily {O}ccurrence in {G}enomes: {P}ower-{L}aw
{B}ehaviour and {E}volutionary {M}odel},
journal = {J. {M}ol. {B}iol.},
year = {2001},
volume = {313},
pages = {673--681},
pdf = {../local/qian01.pdf},
file = {qian01.pdf:local/qian01.pdf:PDF},
subject = {bionet},
url = {http://partslist.org/powerlaw}
}
@article{Rain2001protein-protein,
author = {Rain, J.-C. and Selig, L. and De Reuse, H. and Battaglia, V. and
Reverdy, C. and Simon, S. and Lenzen, G. and Petel, F. and Wojcik,
J. and Sch{\"a}chter, V. and Chemama, Y. and Labigne, A. and Legrain,
P.},
title = {The protein-protein interaction map of {H}elicobacter pylori},
journal = {Nature},
year = {2001},
volume = {409},
pages = {211--215},
pdf = {../local/rain01.pdf},
file = {rain01.pdf:local/rain01.pdf:PDF},
subject = {bionetprot},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v409/n6817/full/409211a0_fs.html&content_filetype=pdf}
}
@article{Slanina2000Random,
author = {Slanina, F. and Kotrla, M.},
title = {Random networks created by biological evolution},
journal = {Phys. {R}ev. {E}},
year = {2000},
volume = {62},
pages = {6170-6177},
number = {5},
pdf = {../local/slan00.pdf},
file = {slan00.pdf:local/slan00.pdf:PDF},
subject = {bionet},
url = {http://ojps.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000062000005006170000001&idtype=cvips&gifs=yes}
}
@techreport{Sole2001Model,
author = {Sol{\'e}, R. V. and Pastor-Satorras, R. and Smith, E. D. and Kepler,
T.},
title = {A {M}odel of {L}arge-{S}cale {P}roteome {E}volution},
institution = {Santa Fe Institute},
year = {2001},
note = {Working paper 01-08-041},
pdf = {../local/sole01.pdf},
file = {sole01.pdf:local/sole01.pdf:PDF},
subject = {bionetprot},
url = {http://www.santafe.edu/sfi/publications/Abstracts/01-08-041abs.html}
}
@article{Uetz2000comprehensive,
author = {Uetz, P. and Giot, L. and Cagney, G. and Mansfield, T. A. and Judson,
R. S. and Knight, J. R. and Lockshon, D. and Narayan, V. and Srinivasan,
M. and Pochart, P. and Qureshi-Emili, A. and Li, Y. and Godwin, B.
and Conover, D. and Kalbfleish, T. and Vijayadamodar, G. and Yang,
M. and Johnston, M. and Fields, S. and Rothberg, J. M.},
title = {A comprehensive analysis of protein-protein interactions in {S}accharomyces
cerevisiae},
journal = {Nature},
year = {2000},
volume = {403},
pages = {623--627},
pdf = {../local/uetz00.pdf},
file = {uetz00.pdf:local/uetz00.pdf:PDF},
subject = {bionet},
url = {http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v403/n6770/full/403623a0_fs.html&content_filetype=pdf}
}
@unpublished{Vazquez2001Modeling,
author = {Vazquez, A. and Flammini, A. and Maritan, A. and Vespignani, A.},
title = {Modeling of protein interaction networks},
note = {E-print cond-mat/0108043},
month = {Aug},
year = {2001},
pdf = {../local/vazq01.pdf},
file = {vazq01.pdf:local/vazq01.pdf:PDF},
subject = {bionetprot},
url = {http://xxx.lanl.gov/abs/cond-mat/0108043}
}
@article{Wagner2001Yeast,
author = {Wagner, A.},
title = {The {Y}east {P}rotein {I}nteraction {N}etwork {E}volves {R}apidly
and {C}ontains {F}ew {R}edundant {D}uplicate {G}enes},
journal = {Mol. {B}iol. {E}vol.},
year = {2001},
volume = {18},
pages = {1283--1292},
pdf = {../local/wagn01.pdf},
file = {wagn01.pdf:local/wagn01.pdf:PDF},
subject = {bionet},
url = {http://www.santafe.edu/sfi/publications/Abstracts/01-04-022abs.html}
}
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ochim. Biophys. Acta;Bioinformatics;Biometrika;BMC Bioinformatics;Br.
J. Pharmacol.;Breast Cancer Res.;Cell;Cell. Signal.;Chem. Res. Toxicol
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ACM;J. Am. Soc. Inf. Sci. Technol.;J. Am. Stat. Assoc.;J. Bioinform. C
omput. Biol.;J. Biol. Chem.;J. Biomed. Inform.;J. Cell. Biochem.;J. Ch
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Biol.;J. Comput. Graph. Stat.;J. Eur. Math. Soc.;J. Intell. Inform. Sy
st.;J. Mach. Learn. Res.;J. Med. Chem.;J. Mol. BIol.;J. R. Stat. Soc.
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