hic references

[Lieberman-Aiden2009Comprehensive] Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A Mirny, Eric S Lander, and Job Dekker. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science, 326(5950):289-293, Oct 2009. [ bib | DOI | http | .pdf | Abstract ]
[Berkum2010HiC] N. L. van Berkum, E. Lieberman-Aiden, L. Williams, M. Imakaev, A. Gnirke, L. A. Mirny, J. Dekker, and E. S. Lander. Hi-C: a method to study the three-dimensional architecture of genomes. J. Vis. Exp., 39:e1869, 2010. [ bib | DOI | http | Abstract ]
[Yaffe2011Probabilistic] E. Yaffe and A. Tanay. Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat. Genet., 43(11):1059-1065, 2011. [ bib | DOI | http | .pdf | Abstract ]
[Zhang2012Spatial] Y. Zhang, R. A. McCord, Y.-J. Ho, B. R. Lajoie, D. G. Hildebrand, A. C. Simon, M. S. Becker, F. W. Alt, and J. Dekker. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell, 148(5):908 - 921, 2012. [ bib | DOI | http | .pdf | Abstract ]
[Dixon2012Topological] J. R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J. S. Liu, and B. Ren. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature, 485(5):376-80, 2012. [ bib | DOI | http | .pdf ]
[Homouz20133D] D. Homouz and A. S. Kudlicki. The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes. PLoS ONE, 8(1):e54699, 01 2013. [ bib | DOI | http | .pdf | Abstract ]
[Ben-Elazar2013Spatial] S. Ben-Elazar, Z. Yakhini, and I. Yanai. Spatial localization of co-regulated genes exceeds genomic gene clustering in the saccharomyces cerevisiae genome. Nucleic Acids Res, 41(4):2191-2201, Feb 2013. [ bib | DOI | http | .pdf | Abstract ]

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