iced.utils.get_intra_mask¶

iced.utils.get_intra_mask(lengths, counts=None)¶

Returns a mask for intrachromosomal interactions

Parameters:

Parameters:	lengths : ndarray, (n, ) lengths of the chromosomes counts : ndarray or sparse matrix (n, n), optional, default: None if provided, and if sparse, will only return genomic distances for non-zero elements of the sparse matrix.
Returns:	mask : ndarray (m, m) boolean mask

lengths : ndarray, (n, )

lengths of the chromosomes

counts : ndarray or sparse matrix (n, n), optional, default: None

if provided, and if sparse, will only return genomic distances for non-zero elements of the sparse matrix.

Returns:

mask : ndarray (m, m)

boolean mask