This is the class and reference of iced.
iced.normalization: Normalization¶normalization.ICE_normalization(X[, SS, …]) |
ICE normalization |
normalization.SCN_normalization(X[, …]) |
Sequential Component Normalization |
normalization.estimate_block_biases(counts, …) |
Estimates block biases |
iced.filter: Filter¶filter.filter_low_counts(X[, lengths, …]) |
Filter rows and columns with low counts |
filter.filter_high_counts(X[, lengths, …]) |
Filter rows and columns with high counts |
iced.datasets: Datasets¶datasets.load_sample_yeast() |
Load and return a sample of S. |
iced.utils: Utils¶utils.get_intra_mask(lengths[, counts]) |
Returns a mask for intrachromosomal interactions |
utils.get_inter_mask(lengths) |
Returns a mask for interchromosomal interactions |
utils.extract_sub_contact_map(counts, …) |
Extract the contact map associated to a given list of chromosome |
utils.downsample_resolution(counts, lengths) |
Downsamples the resolution of a matrix |